View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_high_19 (Length: 307)
Name: NF4020_high_19
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 35501965 - 35502213
Alignment:
| Q |
19 |
gagtaggattaagattggaagataaaaaatttggaacaaaaatcactttgcaaatgcttgttagtcggcataaccnnnnnnncttttcgagtnnnnnnnc |
118 |
Q |
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| T |
35501965 |
gagtaggatttatattggaagataaaaaatttggaacaaaaatgactttgcaaatgcttgttagtctgcataaccaaaaaa-cttttcgagtaaaaaaac |
35502063 |
T |
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| Q |
119 |
tgacggatagaaaatccactcgaaaaccaaagtaat--acaaaagacacatttgagaaccaaattaac-------------attggaacaaagaaattcg |
203 |
Q |
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|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
35502064 |
tgacagatagaaaatccactcgaaaaccaaattaattaacaaaagacacatttgagaaccaaattaaccaacaaaagacacattggaacagataaattcg |
35502163 |
T |
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| Q |
204 |
agttctacagtgacacgtcggacacaatgaagcatcaaaataaccgtttt |
253 |
Q |
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| T |
35502164 |
agttctacagtgacacgtcggacacaatgaagcatcaaaataaccgtttt |
35502213 |
T |
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