View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4020_high_2 (Length: 622)

Name: NF4020_high_2
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4020_high_2
NF4020_high_2
[»] chr6 (10 HSPs)
chr6 (12-548)||(32590128-32590662)
chr6 (180-548)||(32600576-32600946)
chr6 (12-123)||(32601022-32601133)
chr6 (417-504)||(24883687-24883774)
chr6 (268-310)||(24883553-24883595)
chr6 (48-102)||(24883380-24883434)
chr6 (561-606)||(392097-392142)
chr6 (561-606)||(4215696-4215741)
chr6 (561-606)||(12525720-12525765)
chr6 (561-606)||(27433493-27433538)
[»] chr1 (9 HSPs)
chr1 (193-539)||(34577897-34578242)
chr1 (12-102)||(34594091-34594181)
chr1 (234-319)||(34593907-34593992)
chr1 (413-503)||(34593767-34593857)
chr1 (23-95)||(34578398-34578470)
chr1 (561-606)||(38162851-38162896)
chr1 (561-606)||(29210414-29210459)
chr1 (561-606)||(14350417-14350462)
chr1 (561-602)||(18043163-18043204)
[»] chr8 (4 HSPs)
chr8 (561-606)||(168467-168512)
chr8 (561-606)||(27988639-27988684)
chr8 (561-606)||(28045941-28045986)
chr8 (561-606)||(30675712-30675757)
[»] chr7 (4 HSPs)
chr7 (561-606)||(5239286-5239331)
chr7 (417-457)||(27532378-27532418)
chr7 (561-606)||(34333285-34333330)
chr7 (417-457)||(27526724-27526764)
[»] chr4 (5 HSPs)
chr4 (561-606)||(43944508-43944553)
chr4 (561-606)||(4268962-4269007)
chr4 (561-606)||(15186244-15186289)
chr4 (561-606)||(18068019-18068064)
chr4 (561-597)||(33108821-33108857)
[»] chr3 (5 HSPs)
chr3 (562-606)||(43269879-43269923)
chr3 (561-606)||(20923993-20924038)
chr3 (561-606)||(39074420-39074465)
chr3 (561-606)||(43786872-43786917)
chr3 (561-606)||(52520682-52520727)
[»] scaffold0264 (1 HSPs)
scaffold0264 (561-606)||(22962-23007)
[»] scaffold0045 (1 HSPs)
scaffold0045 (561-606)||(50549-50594)
[»] scaffold0003 (1 HSPs)
scaffold0003 (561-606)||(53825-53870)
[»] chr5 (2 HSPs)
chr5 (561-606)||(10054492-10054537)
chr5 (561-606)||(13661809-13661854)
[»] chr2 (2 HSPs)
chr2 (561-606)||(27856536-27856581)
chr2 (561-598)||(35470368-35470405)


Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 548
Target Start/End: Complemental strand, 32590662 - 32590128
Alignment:
Q  12 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32590662 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaat 32590563  T
Q  112 atgataactcacattccaacattatacaatgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctata 211  Q
    ||||||| ||||||||  ||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||   |||||||||||||||||||||||||    
T  32590562 atgataattcacattctcacattatacgatgtctctttttgcataataattgaatcatgaaagaaaagaaaac--caattattttcttcattttcctata 32590465  T
Q  212 ttatgaccaactaactttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32590464 ttatgaccaactaactttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaat 32590365  T
Q  312 taactaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgattgg 411  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32590364 taattaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttgg 32590265  T
Q  412 atattagatcctgatatgcttgaagttggaaatggaggaatgacaacagaggaatatcgtgcccatttcagcatttgggcattagctaaggtgcatgaaa 511  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  32590264 atattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggtgcatgaaa 32590165  T
Q  512 taatttttatatacctattgttgagacaaagtaatat 548  Q
    |||||||||||||||||||||||||||||||||||||    
T  32590164 taatttttatatacctattgttgagacaaagtaatat 32590128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 180 - 548
Target Start/End: Complemental strand, 32600946 - 32600576
Alignment:
Q  180 aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc-tccct-aggatgacttctataatagatgtaaacgataaatgggc 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||    
T  32600946 aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggc 32600847  T
Q  278 atcttatgctggacctggaggatggaatggtaattaactaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactcca 377  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||||||||||    
T  32600846 atcttatgctggacctggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactcca 32600747  T
Q  378 atattaattcctcgtatgtgtcattaatgattggatattagatcctgatatgcttgaagttggaaatggaggaatgacaacagaggaatatcgtgcccat 477  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  32600746 atattaattcctcgtatgtgtcattaatgtttggatattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccat 32600647  T
Q  478 ttcagcatttgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaatat 548  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32600646 ttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaatat 32600576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 32601133 - 32601022
Alignment:
Q  12 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaat 111  Q
    |||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||    
T  32601133 cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaat 32601034  T
Q  112 atgataactcac 123  Q
    ||||||||||||    
T  32601033 atgataactcac 32601022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 24883687 - 24883774
Alignment:
Q  417 agatcctgatatgcttgaagttggaaatggaggaatgacaacagaggaatatcgtgcccatttcagcatttgggcattagctaaggtg 504  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggtg 24883774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 24883553 - 24883595
Alignment:
Q  268 ataaatgggcatcttatgctggacctggaggatggaatggtaa 310  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  24883553 ataaatgggcttcttacgctggacctggaggatggaatggtaa 24883595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
Q  48 agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt 102  Q
    |||||||||||||||||||||||||||  ||||||  ||||||| ||| ||||||    
T  24883380 agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt 24883434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 392097 - 392142
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  392097 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 392142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 4215696 - 4215741
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||||| ||||||||| |||| |||||||||||| ||||||||    
T  4215696 ggaaatgttaaccggtgcccccggggcactggttaagagtatgaaa 4215741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 12525720 - 12525765
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| | |||||||||||||||||||    
T  12525720 ggaaatgctaaccggtgcctccggggtactggttaagggtatgaaa 12525765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 27433493 - 27433538
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  27433493 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 27433538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 193 - 539
Target Start/End: Complemental strand, 34578242 - 34577897
Alignment:
Q  193 ttttcttcattttcctatattatgaccaactaactttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacc 292  Q
    |||||||||||||| ||| || ||| ||||| |||||||||  |   || ||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  34578242 ttttcttcattttc-tatgttgtgatcaactgactttattctacttcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacc 34578144  T
Q  293 tggaggatggaatggtaattaactaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaattcctcgt 392  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  34578143 tggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgt 34578044  T
Q  393 atgtgtcattaatgattggatattagatcctgatatgcttgaagttggaaatggaggaatgacaacagaggaatatcgtgcccatttcagcatttgggca 492  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  34578043 atgtgtcattaatgtttggatattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcatttgggca 34577944  T
Q  493 ttagctaaggtgcatgaaataatttttatatacctattgttgagaca 539  Q
    ||||||||||| ||||||| | ||||||||||| |||||||||||||    
T  34577943 ttagctaaggtacatgaaacactttttatatacatattgttgagaca 34577897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 34594181 - 34594091
Alignment:
Q  12 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt 102  Q
    |||||||||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  34594181 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt 34594091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 34593992 - 34593907
Alignment:
Q  234 ctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaactaac 319  Q
    |||||||| ||||||||||||  ||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34593992 ctccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 34593907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 413 - 503
Target Start/End: Complemental strand, 34593857 - 34593767
Alignment:
Q  413 tattagatcctgatatgcttgaagttggaaatggaggaatgacaacagaggaatatcgtgcccatttcagcatttgggcattagctaaggt 503  Q
    ||||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||||||| | ||||||||||| ||||| |||||||||||    
T  34593857 tattagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 34593767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 34578470 - 34578398
Alignment:
Q  23 ggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattgg 95  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| || || |||||  |||||||||||    
T  34578470 ggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattgg 34578398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 38162851 - 38162896
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  38162851 ggaaatgttaaccggtgcctccggggcactggttaagggtatgaaa 38162896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 29210414 - 29210459
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  29210414 ggaaatgctaaccggtgcctccggggcactggttaagggtatgaaa 29210459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 14350462 - 14350417
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  14350462 ggaaatgctaaccggtgcccccggagcaccggttaagggtatgaaa 14350417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 602
Target Start/End: Original strand, 18043163 - 18043204
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtat 602  Q
    ||||||| | |||||||||||||| |||||||||||||||||    
T  18043163 ggaaatgctaaccggtgcctccggggcactggttaagggtat 18043204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 168467 - 168512
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  168467 ggaaatgctaaccggtgcctccggggcactggttaagggtatgaaa 168512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 27988684 - 27988639
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| ||||||||||||| |||||||    
T  27988684 ggaaatgctaaccggtgcctccggggcactggttaaggatatgaaa 27988639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 28045986 - 28045941
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| ||||||||||||| |||||||    
T  28045986 ggaaatgctaaccggtgcctccggggcactggttaaggatatgaaa 28045941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 30675757 - 30675712
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  30675757 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 30675712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 5239286 - 5239331
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||    
T  5239286 ggaaatgctaaccggtgcctccggagcactggttaatggtatgaaa 5239331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 27532378 - 27532418
Alignment:
Q  417 agatcctgatatgcttgaagttggaaatggaggaatgacaa 457  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgacaa 27532418  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 34333285 - 34333330
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  34333285 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 34333330  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 27526724 - 27526764
Alignment:
Q  417 agatcctgatatgcttgaagttggaaatggaggaatgacaa 457  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgacaa 27526764  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 43944508 - 43944553
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  43944508 ggaaatgctaaccggtgcctccggggcactggttaagggtatgaaa 43944553  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 4269007 - 4268962
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  4269007 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 4268962  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 15186244 - 15186289
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  15186244 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 15186289  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 18068064 - 18068019
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  18068064 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 18068019  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 597
Target Start/End: Complemental strand, 33108857 - 33108821
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaag 597  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  33108857 ggaaatgttaaccggtgcctccggggcactggttaag 33108821  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 606
Target Start/End: Complemental strand, 43269923 - 43269879
Alignment:
Q  562 gaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||    
T  43269923 gaaatgttaaccggtgccttcggagcactggttaaggatatgaaa 43269879  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 20923993 - 20924038
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||| ||||| |||||||||||||||||||||    
T  20923993 ggaaatgctaaccggtgcttccggggcactggttaagggtatgaaa 20924038  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 39074420 - 39074465
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  39074420 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 39074465  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 43786872 - 43786917
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | |||||||||||||| ||||||||||| |||||||||    
T  43786872 ggaaatgctaaccggtgcctccggggcactggttaatggtatgaaa 43786917  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 52520682 - 52520727
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  52520682 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 52520727  T

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Target: scaffold0264 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 22962 - 23007
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||||||||||||||||| |||||||    
T  22962 ggaaatgctaaccggtgcccccggagcactggttaaggatatgaaa 23007  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 50549 - 50594
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||||| |||||||||||||| ||||||||||| | |||||||    
T  50549 ggaaatgttaaccggtgcctccggggcactggttaaagatatgaaa 50594  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 53870 - 53825
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  53870 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 53825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 10054537 - 10054492
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||| |||||||||||||||||||||    
T  10054537 ggaaatgctaaccggtgcccccggggcactggttaagggtatgaaa 10054492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 13661809 - 13661854
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||| | ||||||||| |||||||||||||||||| |||||||    
T  13661809 ggaaatgctaaccggtgcccccggagcactggttaaggatatgaaa 13661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 27856581 - 27856536
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagggtatgaaa 606  Q
    ||||||||| ||||||||| |||| |||||||||||| ||||||||    
T  27856581 ggaaatgttaaccggtgcccccggggcactggttaagagtatgaaa 27856536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 35470405 - 35470368
Alignment:
Q  561 ggaaatgttgaccggtgcctccggagcactggttaagg 598  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  35470405 ggaaatgttaaccggtgcctccggggcactggttaagg 35470368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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