View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_high_8 (Length: 397)
Name: NF4020_high_8
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 24755070 - 24755395
Alignment:
| Q |
16 |
catattgccaagccttatgcatataccaccaaaacagttccgaaggaaactgaaacaagaatttccaccgtgtttttcctcaagaagtttgatagtaacc |
115 |
Q |
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| T |
24755070 |
catattgtgaagctttatgcatataccaccaaaacatttccaaaggaaattgaagcaacaatttccattggctgtttcctcagcaagtttgatagtaacc |
24755169 |
T |
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| Q |
116 |
cctgcagcttggagcctcgaagcacagcgatttagtttgggcttcggatgctgatctgtaccaataatgggtactacataattaccaaccccatcatgtt |
215 |
Q |
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| T |
24755170 |
cctgcagcttggagcctcgaagcacagcgcattagtttgggcttcagatgctga---gtactatcaatgggtactacataattaccaaccacgtgacttt |
24755266 |
T |
|
| Q |
216 |
ttctctcacctttactgttaacgaaaaagtggacaatatcaagaatatgaggagctttgaagtaacttggattttgaacttcaggctgagagtagcctat |
315 |
Q |
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| T |
24755267 |
ttctctcaccttccctgttaacgaaaacgtggacaatatcaataacatgaggagaattaaagtagtttggatcttgaacctgagagtgagagtagcctgt |
24755366 |
T |
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| Q |
316 |
gatagacagaataagattattaatctttt |
344 |
Q |
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| T |
24755367 |
gatagatagaaaaagattattaatctttt |
24755395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 24842914 - 24842650
Alignment:
| Q |
15 |
acatattgccaagccttatgcatataccaccaaaacagttccgaaggaaactgaaacaagaatttccaccgtgtttttcctcaagaagtttgat---agt |
111 |
Q |
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| T |
24842914 |
acatattgccaagctttaccaatataccaccaaaacagttccgaaggaaactgaagcaagacattccgctgcctgtttcctcagcaagtttgatgaaagt |
24842815 |
T |
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| Q |
112 |
aacccctgcagcttggagcctcgaagcacagcgatttagtttgggcttcggatgctgatctgtaccaataatgggtactacataattaccaaccccatca |
211 |
Q |
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| T |
24842814 |
aacccccgcagcttggagccgcgaagcactgcgctttagtttcagcttcggatactgagtagtgtcaataatggatactacatgattgcccaccgcatca |
24842715 |
T |
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| Q |
212 |
tgttttctctcacct------ttactgttaacgaaaaagtggacaatatcaagaatatgaggagc |
270 |
Q |
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| T |
24842714 |
ctttctctctcacttttcatcttattgttaacggagaagtggacactatcaagaatatgaggagc |
24842650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 24897054 - 24897101
Alignment:
| Q |
219 |
tctcacctttactgttaacgaaaaagtggacaatatcaagaatatgag |
266 |
Q |
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| T |
24897054 |
tctcacctttcccgttaacgaaaaagtggacaatatcaagaatatgag |
24897101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 24855792 - 24855832
Alignment:
| Q |
232 |
gttaacgaaaaagtggacaatatcaagaatatgaggagctt |
272 |
Q |
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| T |
24855792 |
gttaacgaaaaagtggacaatatcaagaatgtgaggggctt |
24855832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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