View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4020_high_9 (Length: 391)

Name: NF4020_high_9
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4020_high_9
NF4020_high_9
[»] chr4 (2 HSPs)
chr4 (115-391)||(7285679-7285955)
chr4 (13-43)||(7286027-7286057)
[»] chr6 (2 HSPs)
chr6 (295-353)||(13308824-13308882)
chr6 (295-353)||(14592687-14592745)
[»] chr3 (2 HSPs)
chr3 (295-353)||(13786886-13786944)
chr3 (297-374)||(22599021-22599100)
[»] chr7 (2 HSPs)
chr7 (265-374)||(22348450-22348561)
chr7 (295-353)||(21281390-21281449)
[»] chr5 (1 HSPs)
chr5 (297-374)||(6837344-6837424)
[»] chr1 (1 HSPs)
chr1 (297-374)||(16001375-16001454)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 115 - 391
Target Start/End: Complemental strand, 7285955 - 7285679
Alignment:
Q  115 catgaacaatactaattaataatcatggacataccgattaatatgcaactatttaaccagaagtttacaatcatgttgtatcaacattaaaacaagtcta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7285955 catgaacaatactaattaataatcatggacataccgattaatatgcaactatttaaccagaagtttacaatcatgttgtatcaacattaaaacaagtcta 7285856  T
Q  215 acatcaccatggagccaagcaaagcaatcaagtttcatttcaaatcatattcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7285855 acatcaccatggagccaagcaaagcaatcaagtttcatttcaaatcatattcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaa 7285756  T
Q  315 aatattcaaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacatttggtatgaaatagtaa 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7285755 aatattcaaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacatttggtatgaaatagtaa 7285679  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 7286057 - 7286027
Alignment:
Q  13 aatatattagtaacaactacttctccatact 43  Q
    |||||||||||||||||||||||||||||||    
T  7286057 aatatattagtaacaactacttctccatact 7286027  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 13308882 - 13308824
Alignment:
Q  295 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 353  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  13308882 tgagtcatatttgactccaaaatatccaaaaaagtcattcctgcatgacattaaattac 13308824  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 14592687 - 14592745
Alignment:
Q  295 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 353  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||| || |||||||    
T  14592687 tgagtcatatttgactccaaaatatcaaaaaaagtcattcttgcatgacattaaattac 14592745  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 13786944 - 13786886
Alignment:
Q  295 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 353  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  13786944 tgagtcatatttgactccaaaatatccaaaaaagtcattcctgcatgacattaaattac 13786886  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 22599100 - 22599021
Alignment:
Q  297 agtcatatttgactccaaaatattc--aaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacat 374  Q
    ||||| |||||||| |||||||| |  |||||||||| |||||||  |  |||||||||| |||||||||||||||||||    
T  22599100 agtcacatttgacttcaaaatatcccaaaaaaagtcactcctgcagtacgtaaaattacactaaataaatatatatacat 22599021  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 22348561 - 22348450
Alignment:
Q  265 tcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaaaatattc--aaaaaagtcattcctgcatgatataaaattacattaaataa 362  Q
    |||||||||| |  ||||||| ||| ||||  || || ||||||||||||||||| |  |||||||||| |||| ||  | ||||||||||| |||||||    
T  22348561 tcaaaaaccatagacatgtgttgtgtagtacaaggcacatttgactccaaaatatcccaaaaaaagtcactcctacagtacataaaattacactaaataa 22348462  T
Q  363 atatatatacat 374  Q
    ||||||||||||    
T  22348461 atatatatacat 22348450  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 21281390 - 21281449
Alignment:
Q  295 tgagtcatatttgactccaaaatattc-aaaaaagtcattcctgcatgatataaaattac 353  Q
    ||||||||||||||||||||||||| | |||||||| |||| ||||||| || |||||||    
T  21281390 tgagtcatatttgactccaaaatatccaaaaaaagtaattcatgcatgacattaaattac 21281449  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 6837344 - 6837424
Alignment:
Q  297 agtcatatttgactccaaaatattc---aaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacat 374  Q
    ||||| |||||||| |||||||| |   |||||||||| |||||||  | ||||||||||| |||||||||||||||||||    
T  6837344 agtcacatttgacttcaaaatatcccaaaaaaaagtcactcctgcagtacataaaattacactaaataaatatatatacat 6837424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 16001454 - 16001375
Alignment:
Q  297 agtcatatttgactccaaaatattcaaa--aaagtcattcctgcatgatataaaattacattaaataaatatatatacat 374  Q
    ||||| ||||||||||||||||| | ||  ||||||| |||||||  | ||||||||||| |||||||||||| ||||||    
T  16001454 agtcacatttgactccaaaatatcccaagaaaagtcactcctgcagtacataaaattacactaaataaatatacatacat 16001375  T

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