View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_1 (Length: 945)
Name: NF4020_low_1
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 738
Target Start/End: Original strand, 26797495 - 26798239
Alignment:
| Q |
1 |
atagttaattaattaaccggatatgcagggagtgagaattccatccccaatgaccatagaagtgccaagcattgtaactagcaagaggagtatcttgata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26797495 |
atagttaattaattaaccggatatgcagggagtgagaattccatccccaatgaccatagaagtgccaagcattgtaactagcaagaggagtatcttgata |
26797594 |
T |
|
| Q |
101 |
gtgtagctcttctcaagaatagatttaagccatgaagccctcttcatgctactatctttgggtgactccagcttgtaattagacacttcagcatcttcag |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26797595 |
gtgtagctcttctcaataatagatttaagccatgaagccctcttcatgctactatctttgggtgactccagcttgtaattagacacttcagcatcttcaa |
26797694 |
T |
|
| Q |
201 |
tttgttgatttggaagaattcccactttggcataacggcatatcaaagaatataaagcaaaagtccctcctaaaaatagtagtagttctttattatatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26797695 |
tttgttgatttggaagaattcccactttggcataacggcatatcaaagaatataaagcaaaagtccctcctaaaaatagtagtagttctttattatatat |
26797794 |
T |
|
| Q |
301 |
gttgcaaaaccagaagattaaattgaaaaaatgaaggaaatgctaacaagtgccctaaaaagtctaaagcagaaattttgttttcgaactgatgcattta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
26797795 |
gttgcaaaaccagaagattaaattgaaaaaat-aaggaaatgttaacaagtgccgtaaaatgtctaaagagaaaattttgttttggaactgatgcattta |
26797893 |
T |
|
| Q |
401 |
acacattgaaagtttaaaaagtagctttctatctatcctcagagcattcgttagcaaaacctaaaaat----taaatatacgtagtt--------tgcat |
488 |
Q |
| |
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||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
26797894 |
acacattaaaagtttaaaaagtaattt----tctatcctcagagcatttgttagcaagacctaaaaatgaaataaatatacgtagtttgcacgcatgcat |
26797989 |
T |
|
| Q |
489 |
gcatgcttaccgtccccattatcagtggcacgcaagacgatgaatacatacttaacaagagttacaagagtgatggtgtaaaagatcaaagaaaaaaccc |
588 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26797990 |
gcatgcttaccgtccccattatcagtagcacgcaagacgatgaatacatacttaacaagagttacaagagtgatggtgtaaaagatcaaagaaaaaaccc |
26798089 |
T |
|
| Q |
589 |
ctaaaatatcatcattgtcctttacaccattggcgaaaatacttgtatacacatacaaaggtgatgttcctaggtctccatacacaattcccatgctttg |
688 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26798090 |
ctaaaatatcatcgttgtcctttacaccattggcgaaaatacttgtatacacatacaaaggtgatgttcctaggtctccatacacaattcccatgctttg |
26798189 |
T |
|
| Q |
689 |
aaacgctagttgcataatcactgccatcgatggccccttaaatttacaaa |
738 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26798190 |
aaacgctagttgcataatcactgccatcgatggccccttaaatttacaaa |
26798239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 815 - 934
Target Start/End: Original strand, 26798314 - 26798433
Alignment:
| Q |
815 |
ctttactttagaagcatgtgatgaagaaggtaagctgcgtgattccatgtcaagagaatcgcgtttttgggttgaaaaatgagaatgatcataaactcga |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26798314 |
ctttactttagaagcatgtgatgaagaaggtaaactgcgtgattccatgtcaagagaatcacgtttttgggttgaaaaatgagaatgatcataaactcga |
26798413 |
T |
|
| Q |
915 |
ttgtcatgatgattatgctc |
934 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26798414 |
ttgtcatgatgattatgctc |
26798433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 14955301 - 14955263
Alignment:
| Q |
390 |
tgatgcatttaacacattgaaagtttaaaaagtagcttt |
428 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| |
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| T |
14955301 |
tgatgcattcaacacattgaaagtttaaaaagtaacttt |
14955263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 49899147 - 49899080
Alignment:
| Q |
356 |
taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||| ||| ||||||| |
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| T |
49899147 |
taaaaagtctaaagcagaaactttgttttggaaatgatgcattcaacacattgaaattttgaaaagta |
49899080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 7845152 - 7845219
Alignment:
| Q |
356 |
taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | ||||||||||||| ||| ||||||||||||||| |
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|
| T |
7845152 |
taaaaagtctaaagaagaaattttgttttagtaaggatgcatttaacatattaaaagtttaaaaagta |
7845219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 10483284 - 10483331
Alignment:
| Q |
376 |
ttttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
10483284 |
ttttgttttagaaatgatgcatttaatacattgaaagttttaaaagta |
10483331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 423
Target Start/End: Original strand, 31535696 - 31535729
Alignment:
| Q |
390 |
tgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
31535696 |
tgatgcatttaacacattgaaagtttaaaaagta |
31535729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 38868845 - 38868910
Alignment:
| Q |
363 |
tctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagtagcttt |
428 |
Q |
| |
|
||||||| |||||||||| || | | ||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
38868845 |
tctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaacttt |
38868910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 36363568 - 36363623
Alignment:
| Q |
356 |
taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaa |
411 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | | ||||||||| |||||||||||| |
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|
| T |
36363568 |
taaaaagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaa |
36363623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 28299689 - 28299756
Alignment:
| Q |
356 |
taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||| ||||| | |||||||||||| ||| |||||||||||| ||||||| ||||||||||| |
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|
| T |
28299689 |
taaaaagtttaaagaataaattttgttttagaaatgatgcatttaatgtattgaaattttaaaaagta |
28299756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 423
Target Start/End: Complemental strand, 752262 - 752199
Alignment:
| Q |
360 |
aagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||||| ||||||||||| || | | ||||||||| |||||||||||| || |||||||| |
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|
| T |
752262 |
aagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagta |
752199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 41311710 - 41311760
Alignment:
| Q |
373 |
aaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta |
423 |
Q |
| |
|
|||||||||||| || | |||||||||||| ||||||||||||||||||| |
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|
| T |
41311710 |
aaattttgttttgaaaattatgcatttaacaaattgaaagtttaaaaagta |
41311760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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