View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4020_low_12 (Length: 380)

Name: NF4020_low_12
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4020_low_12
NF4020_low_12
[»] chr5 (3 HSPs)
chr5 (4-364)||(962255-962618)
chr5 (249-297)||(32158427-32158475)
chr5 (249-297)||(40384285-40384333)
[»] chr4 (5 HSPs)
chr4 (249-299)||(20610771-20610821)
chr4 (252-299)||(18497424-18497471)
chr4 (249-299)||(36008307-36008357)
chr4 (253-299)||(42432040-42432086)
chr4 (249-297)||(54854192-54854240)
[»] chr3 (5 HSPs)
chr3 (249-299)||(42271026-42271076)
chr3 (232-307)||(27394532-27394603)
chr3 (249-297)||(33206791-33206839)
chr3 (261-305)||(46006429-46006473)
chr3 (249-297)||(47191407-47191455)
[»] chr8 (2 HSPs)
chr8 (251-297)||(8740671-8740717)
chr8 (249-297)||(10970300-10970348)
[»] chr6 (2 HSPs)
chr6 (249-299)||(8176028-8176078)
chr6 (249-297)||(6455487-6455535)
[»] chr1 (3 HSPs)
chr1 (249-307)||(42946480-42946538)
chr1 (232-307)||(19424070-19424142)
chr1 (249-297)||(3341749-3341797)
[»] chr7 (2 HSPs)
chr7 (256-305)||(20101644-20101693)
chr7 (251-299)||(10020484-10020532)
[»] chr2 (2 HSPs)
chr2 (232-307)||(43684303-43684374)
chr2 (249-297)||(18386825-18386873)
[»] scaffold0343 (1 HSPs)
scaffold0343 (249-297)||(8594-8642)
[»] scaffold0039 (1 HSPs)
scaffold0039 (249-297)||(101865-101913)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 364
Target Start/End: Complemental strand, 962618 - 962255
Alignment:
Q  4 atgtcgaagaaaatctttcaatataaatgacattcagttaaaatgttaacattttcttacatatatttt-ctataca--taccaaggatcgaaccataga 100  Q
    |||||||| | |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  962618 atgtcgaaaataatcattcaatataagtgacattcacttaaaatgttaacattttcttacatatatttttctatacacataccaaggatcgaaccataga 962519  T
Q  101 tcaagtattgaccnnnnnnntacaagtatctattacttgtgtaacacatcacgttggtacaactattaatattttgataaagaaaagtaggagtattaat 200  Q
     |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  962518 ccaagtattgatcaaaaaaatacaagtatctattacttgtgtaacacatcacgttggtacaactattagtattttgataaagaaaagtaagagtattaat 962419  T
Q  201 ttatttttgtcaaataatccatcgacttgataaattcaccttaaaggtggtgaataagtaggatgttcggagttcgatccccagcccctgcatataacat 300  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  962418 ttatttttgtcaaataacccatcgacttgataaattcaccttaaagatgatgaataagtagggtgtccggagttcgaaccccaacccctgcatataacat 962319  T
Q  301 gcattattttttagtaagtgaactaaactcacatgaacactaaactcacatggacggtatgagt 364  Q
    ||||||||  |||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  962318 gcattattccttagtaagtgaactaaactttcatggacactaaactcacatggacggtatgagt 962255  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 32158427 - 32158475
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||||||| |||||| |||| ||||||||||||||    
T  32158427 ggtgaataagtggggtgttcggggttcgaaccccggcccctgcatataa 32158475  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 40384333 - 40384285
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||| |||||||||| |||||||| ||||||||||    
T  40384333 ggtgaataagtggggtgtccggagttcgaaccccagccgctgcatataa 40384285  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 20610821 - 20610771
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    ||||||||||| |||||| |||||||||| |||| ||||||||||||||||    
T  20610821 ggtgaataagtgggatgtccggagttcgaaccccggcccctgcatataaca 20610771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 18497471 - 18497424
Alignment:
Q  252 gaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||||    
T  18497471 gaataagtgggatgtccggagttcgaaccccaacccctgcatataaca 18497424  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 36008357 - 36008307
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    ||||||||||| || ||||||| |||||| |||| ||||||||||||||||    
T  36008357 ggtgaataagtggggtgttcggggttcgaaccccggcccctgcatataaca 36008307  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 42432086 - 42432040
Alignment:
Q  253 aataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||    
T  42432086 aataagtagggtgttcggagttcgaaccccaatccctgcatataaca 42432040  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 54854192 - 54854240
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    |||||||||||  ||||| ||| |||||| |||||||||||||||||||    
T  54854192 ggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataa 54854240  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 42271026 - 42271076
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    |||||||||||||| ||| |||||||||| |||| ||||||||||||||||    
T  42271026 ggtgaataagtagggtgtccggagttcgaaccccggcccctgcatataaca 42271076  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 27394603 - 27394532
Alignment:
Q  232 aaattcaccttaaaggtggtgaataagtaggatgttcggagttcgatccccagcccctgcatataacatgcattat 307  Q
    ||||||||||||||||||   ||||||| || ||| ||| |||| | ||||||||||||||||||| |||||||||    
T  27394603 aaattcaccttaaaggtg---aataagtggggtgtccggggttcaaaccccagcccctgcatataa-atgcattat 27394532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 33206839 - 33206791
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||| ||| |||||| |||||||||||||||||||    
T  33206839 ggtgaataagtggggtgtccggggttcgaaccccagcccctgcatataa 33206791  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 46006429 - 46006473
Alignment:
Q  261 ggatgttcggagttcgatccccagcccctgcatataacatgcatt 305  Q
    |||||| |||||||||| ||||| ||||||||||||| |||||||    
T  46006429 ggatgtccggagttcgaaccccaccccctgcatataatatgcatt 46006473  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 47191455 - 47191407
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||||||| |||||| | |||||||||||||||||    
T  47191455 ggtgaataagtggggtgttcggggttcgaactccagcccctgcatataa 47191407  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 8740671 - 8740717
Alignment:
Q  251 tgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||||    
T  8740671 tgaataagtagggtgtccggagttcgaacctcagcccctgcatataa 8740717  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 10970348 - 10970300
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||||||| ||| || |||||||||||||||||||    
T  10970348 ggtgaataagtggggtgttcggggtttgaaccccagcccctgcatataa 10970300  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 8176078 - 8176028
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    ||||||||||| || |||||||||||||| | |||| ||||||||||||||    
T  8176078 ggtgaataagtggggtgttcggagttcgaacaccagtccctgcatataaca 8176028  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 6455535 - 6455487
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    |||||||||||||| ||| |||||||||| ||||||||| | |||||||    
T  6455535 ggtgaataagtagggtgtccggagttcgaaccccagcccatacatataa 6455487  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 42946480 - 42946538
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataacatgcattat 307  Q
    ||||||||||| || ||| ||| |||| | ||||||||||||||||||| |||||||||    
T  42946480 ggtgaataagtggggtgtccggggttcaaaccccagcccctgcatataatatgcattat 42946538  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 19424142 - 19424070
Alignment:
Q  232 aaattcaccttaaaggtggtgaataagtaggatgttcggagttcgatccccagcccctgcatataacatgcattat 307  Q
    ||||||||||||||||||   ||||||| || ||| ||| |||||| ||||  ||||||||||||| |||||||||    
T  19424142 aaattcaccttaaaggtg---aataagtggggtgtccggggttcgaaccccgacccctgcatataatatgcattat 19424070  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 3341749 - 3341797
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||| ||| ||||||||||| ||||||||||||||    
T  3341749 ggtgaataagtggggtgtccggggttcgatccccggcccctgcatataa 3341797  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 20101644 - 20101693
Alignment:
Q  256 aagtaggatgttcggagttcgatccccagcccctgcatataacatgcatt 305  Q
    ||||||| ||| |||||||||| |||| |||||||||||||| |||||||    
T  20101644 aagtagggtgtccggagttcgaaccccggcccctgcatataatatgcatt 20101693  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 10020484 - 10020532
Alignment:
Q  251 tgaataagtaggatgttcggagttcgatccccagcccctgcatataaca 299  Q
    ||||||||| || ||||||| |||||| ||||| |||||||||||||||    
T  10020484 tgaataagtgggttgttcggggttcgaaccccaacccctgcatataaca 10020532  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 43684374 - 43684303
Alignment:
Q  232 aaattcaccttaaaggtggtgaataagtaggatgttcggagttcgatccccagcccctgcatataacatgcattat 307  Q
    ||||||||||||||||||   ||||||| || ||||||| |||||| || ||||||||||||| || |||||||||    
T  43684374 aaattcaccttaaaggtg---aataagtggggtgttcggggttcgaacctcagcccctgcatacaa-atgcattat 43684303  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 18386825 - 18386873
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| || ||| |||||||||| ||||||||||| |||||||    
T  18386825 ggtgaataagtggggtgtccggagttcgaaccccagcccctacatataa 18386873  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 8642 - 8594
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    |||||||||||||| ||||||| |||||| ||||| ||||| |||||||    
T  8642 ggtgaataagtagggtgttcggggttcgaaccccaacccctacatataa 8594  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 101913 - 101865
Alignment:
Q  249 ggtgaataagtaggatgttcggagttcgatccccagcccctgcatataa 297  Q
    ||||||||||| ||||||| || |||||| |||| ||||||||||||||    
T  101913 ggtgaataagtgggatgtttggggttcgaaccccggcccctgcatataa 101865  T

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