View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_17 (Length: 338)
Name: NF4020_low_17
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 17782064 - 17782376
Alignment:
| Q |
18 |
agaactagcccttaaagttaagggtataccttacaagtatgtggacgaagatttgagaaacaaaagtgattccctcttaaagtacaatcctgtccataaa |
117 |
Q |
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| T |
17782064 |
agaactagcccttaaagtgaagggtataccttacaagtatgtggacgaagatttgagaaacaaaagtgattccctcttaaagtacaatcctgtccataaa |
17782163 |
T |
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| Q |
118 |
aaggtcccaattctcttacacaaaggaaggtcaatttgtgagtcacaaatcattcttgaatatatcgatgagatttggaatcatagtcccaaattgttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
17782164 |
aaggtcccaattctcttacacaaaggaaggtcaatttgtgagtcacaaatcattcttgaatacatcgatgagatttgggatcatagtcccaaattgttgc |
17782263 |
T |
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| Q |
218 |
cagaggatccttatcaaagagctaaagttcgtttttgggccaactactttgatcagaaagtacacatcattcattactttctttctacttttcttctata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17782264 |
cagaggatccttatcaaagagctaaagttcgtttttgggccaactactttgatcagaaagtacacatcattcattactttctttctacttttcttctata |
17782363 |
T |
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| Q |
318 |
tttgtgatgatgt |
330 |
Q |
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|||| |||||||| |
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| T |
17782364 |
tttgcgatgatgt |
17782376 |
T |
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