View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4020_low_18 (Length: 324)
Name: NF4020_low_18
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_18 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 49340723 - 49340397
Alignment:
| Q |
13 |
cagaaccactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49340723 |
cagaaccactaacactagctgaattgaggattttaacaagcagattctcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctc |
49340624 |
T |
|
| Q |
113 |
acctaaactcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaacaat---------------actattactatctcta |
197 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | | |
|
|
| T |
49340623 |
atctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaattccaacaataggaataacagagagactattactatcacca |
49340524 |
T |
|
| Q |
198 |
ctatcttgcaataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgccttttta |
297 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
49340523 |
ctatcttgcaataacagattaatgattttttgtttatcatgttttcttcctatcacatcagaatcaatcacatatgaatgtgtcaattcgcgccttttta |
49340424 |
T |
|
| Q |
298 |
caacacggttatccctatcattgattt |
324 |
Q |
| |
|
||||||| ||||| ||||||||||||| |
|
|
| T |
49340423 |
caacacgattatcactatcattgattt |
49340397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 49352086 - 49351761
Alignment:
| Q |
14 |
agaaccactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctca |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352086 |
agaaccactaacactagctgcattgaggattttaacaagcagattcttaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctca |
49351987 |
T |
|
| Q |
114 |
cctaaactcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaaca---------------atactattactatctctac |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||||||| | | |
|
|
| T |
49351986 |
tctaaactcttatcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataacagagagactattactatcaccgc |
49351887 |
T |
|
| Q |
199 |
tatcttgcaataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgcctttttac |
298 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
49351886 |
tatcttgcaataacatatcaatgattttttgtttatcatgttcccttcctatcacatcagaatcaatcacatatgaatgtgtcaattcgcgcctttttac |
49351787 |
T |
|
| Q |
299 |
aacacggttatccctatcattgattt |
324 |
Q |
| |
|
|||||| ||||| ||||||||||||| |
|
|
| T |
49351786 |
aacacgattatcactatcattgattt |
49351761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 19030488 - 19030339
Alignment:
| Q |
12 |
acagaaccactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19030488 |
acagaaccactaacactagctgaattgagtattttaacaagcagatttgcaagttcaaaa----------cacacacccacatcttcaatggaaaagtct |
19030399 |
T |
|
| Q |
112 |
cacctaaactcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaa |
171 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19030398 |
catctaaactcttaacattaaacactgcctttgcaagtgtagtttttcctaatcctccaa |
19030339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 32784188 - 32784514
Alignment:
| Q |
13 |
cagaaccactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
32784188 |
cagaaccactaacactagctgcatttaggattttaagaagcagattcttaagtccaaaatcatcagagacacaaacccacatcttcaatgaaaaagtctc |
32784287 |
T |
|
| Q |
113 |
acctaaactcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaacaat---------------actattactatctcta |
197 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| | | |
|
|
| T |
32784288 |
atctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaacaataggaataacagagagactattactatcacca |
32784387 |
T |
|
| Q |
198 |
ctatcttgcaataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgccttttta |
297 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32784388 |
ctatctagcaataactgattaatgattttttgtttatcatgttttcttcctatcacatcagaatcattcacatatgaatgtgtcaattcacgtcttttta |
32784487 |
T |
|
| Q |
298 |
caacacggttatccctatcattgattt |
324 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
32784488 |
caacacggttatcactatcattgattt |
32784514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 29743442 - 29743126
Alignment:
| Q |
19 |
cactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcacctaa |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
29743442 |
cactaacgctagctgaattgatgattttaacaagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatggaaaagtctcgtctaa |
29743343 |
T |
|
| Q |
119 |
actcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaacaatactatta------------ctatctctactatcttgc |
206 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||| ||||| || || ||||||||||||||| | || ||| |||||||||| |
|
|
| T |
29743342 |
actcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataacagagagaattttatgatcactatcttgc |
29743243 |
T |
|
| Q |
207 |
aataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgcctttttacaacacggt |
306 |
Q |
| |
|
||||| ||| |||| ||||| |||||||| | |||||||||||| |||||| ||||| | |||| ||||| ||||| |||||||||||||||||| | | |
|
|
| T |
29743242 |
aataagagatcaataattttgtgtttatcgttttctcttcctatcacatcagaatcaattacatgcgaatgagtcaactcacgcctttttacaacatgat |
29743143 |
T |
|
| Q |
307 |
tatccctatcattgatt |
323 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
29743142 |
tatcactatcattgatt |
29743126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 29750479 - 29750162
Alignment:
| Q |
19 |
cactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcacctaa |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
29750479 |
cactaacgctagctgaattgaggattttaacgagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatggaaatgtctcgtctaa |
29750380 |
T |
|
| Q |
119 |
actcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaacaatactatta------------ctatctctactatcttgc |
206 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||| ||||| || || ||||||||||||||| | || ||| | |||||||||| |
|
|
| T |
29750379 |
actcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgaccactatcttgc |
29750280 |
T |
|
| Q |
207 |
aataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgcctttttacaacacggt |
306 |
Q |
| |
|
||||| ||| |||| |||||||| ||||| | || |||||||| |||||| ||||| |||| ||||| ||||| || ||||||||||||||| | | |
|
|
| T |
29750279 |
aataagagatcaataattttttgcttatcgtaatcccttcctatcacatcagaatcaactacatgcgaatgagtcaactcccgcctttttacaacatgat |
29750180 |
T |
|
| Q |
307 |
tatccctatcattgattt |
324 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
29750179 |
tatcgctatcattgattt |
29750162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 29602815 - 29603132
Alignment:
| Q |
19 |
cactaacactagctgaattgaggattttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcacctaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
29602815 |
cactaacgctagctgaattgaggattttaatgagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaa |
29602914 |
T |
|
| Q |
119 |
actcttatcatgaaacactgcctttgcaagtgtagtttttcctaatcccccaattccaacaatactatta------------ctatctctactatcttgc |
206 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||| ||||| || || ||||||||||||||| | || ||| | |||||||||| |
|
|
| T |
29602915 |
actcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgaccactatcttgc |
29603014 |
T |
|
| Q |
207 |
aataatagagcaatgattttttgtttatcatgttctcttcctattacatcataatcactcacatatgaatgtgtcaattcacgcctttttacaacacggt |
306 |
Q |
| |
|
||||| ||| |||| |||||||| ||||| | || |||||||| |||||| ||||| |||| ||||| ||||| || ||||||||||||||| | | |
|
|
| T |
29603015 |
aataagagatcaataattttttgcttatcgtaatcccttcctatcacatcagaatcaactacatgcgaatgagtcaactcccgcctttttacaacatgat |
29603114 |
T |
|
| Q |
307 |
tatccctatcattgattt |
324 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
29603115 |
tatcgctatcattgattt |
29603132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 36226002 - 36226037
Alignment:
| Q |
66 |
tcaaaatcatcagagacacacacccacatcttcaat |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36226002 |
tcaaaatcatcagagatacacacccacatcttcaat |
36226037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35977564 - 35977605
Alignment:
| Q |
69 |
aaatcatcagagacacacacccacatcttcaa-tggaaaagt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
35977564 |
aaatcatcagagatacacacccacatcttcaactggaaaagt |
35977605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35998976 - 35999017
Alignment:
| Q |
69 |
aaatcatcagagacacacacccacatcttcaa-tggaaaagt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
35998976 |
aaatcatcagagatacacacccacatcttcaactggaaaagt |
35999017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 13441294 - 13441342
Alignment:
| Q |
276 |
tgtgtcaattcacgcctttttacaacacggttatccctatcattgattt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13441294 |
tgtgtcaattcacgcctttttacaacacggttatcactatcattgattt |
13441342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 35157589 - 35157474
Alignment:
| Q |
45 |
ttaacaagcagatttgcaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcacctaaactcttatcatgaaacactgcctttg |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| || | ||||||||| |||||||||| ||| ||| ||||||||||| |||||| | |||| |
|
|
| T |
35157589 |
ttaacaagcagattcttaacatcaaaatcatccgagacgcatatccacatctttaatggaaaagagtcaactacactcttatcattaaacacaacttttg |
35157490 |
T |
|
| Q |
145 |
caagtgtagtttttcc |
160 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
35157489 |
caagtgtagtctttcc |
35157474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 18125814 - 18125854
Alignment:
| Q |
66 |
tcaaaatcatcagagacacacacccacatcttcaatggaaa |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
18125814 |
tcaaaattatcagagacacacacccacatcttcaattgaaa |
18125854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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