View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_19 (Length: 323)
Name: NF4020_low_19
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 42899304 - 42899010
Alignment:
| Q |
18 |
catctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtaggagtaggaccatttcta |
117 |
Q |
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| T |
42899304 |
catctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtagaagtaggaccatttcta |
42899205 |
T |
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| Q |
118 |
gggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtactt |
217 |
Q |
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| T |
42899204 |
gggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtactt |
42899105 |
T |
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| Q |
218 |
cttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgtgtttggagattgttcatgttgtgatga |
312 |
Q |
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| T |
42899104 |
cttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgagtttggagattgttcatgttgtgatga |
42899010 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 5787629 - 5787666
Alignment:
| Q |
22 |
tgagctgctttctgtaacaatgctgtagctgacatgtg |
59 |
Q |
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| T |
5787629 |
tgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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