View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_3 (Length: 610)
Name: NF4020_low_3
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 592
Target Start/End: Complemental strand, 41684992 - 41684413
Alignment:
| Q |
13 |
aatatcagtaaaagcatacctcaagaaagagatgggctttgaatatgacttccttggagctgttgctgtggctcacgttgcttttgtagttatgtttctt |
112 |
Q |
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| T |
41684992 |
aatatcagtaaaagcatacctcaagaaagagatgggctttgaatatgacttccttggagctgttgctgtggctcacgttgcttttgtagttatgtttctt |
41684893 |
T |
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| Q |
113 |
tttgtatttgcttatggcatcaaagtctttaatttccagaagaggtaaataatacagaataaaaaacagaaagagccaatagaaatgaagaacaaatgaa |
212 |
Q |
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| T |
41684892 |
tttgtatttgcttatggcatcaaagtctttaatttccagaagaggtaaataatacagaatgaaaaacagaaagagccaatagaaatgaagaacaaatgaa |
41684793 |
T |
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| Q |
213 |
agagagatatttaaacttaaagatttctgtatcataaatagcttgaataaacaaatatatttttggctttcattacctctttcatttgcagtctgggatt |
312 |
Q |
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| T |
41684792 |
agagagatatttaaacttaaagatttctgtatcataaatagcttgaataaacaaatatatttttggctttcattacctctttcatttgcagtccgggatt |
41684693 |
T |
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| Q |
313 |
tttcgcttgcgtctacttattgattaatggtcatattatatcagcttggcactaatatgttttctaaattatctcatttgaaatggtaatgattcataag |
412 |
Q |
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| T |
41684692 |
tttcgcttgcatctacttattgattaatggtcatattatatcagcttggcactaatatgttttccaaattatcccatttgaaatggtaatgattcataag |
41684593 |
T |
|
| Q |
413 |
catgttttgcaattgaaaatatttaaaagaagttgtagatattactgtaagaatatgaaccatctttcaaacaagtttaagacttgtgaagaagaaattg |
512 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41684592 |
aatgttttgcaattgaaaatatttaaaagaagttgcagatattactgtaagaatatgaaccatctttcaaacaagtttaagacttgtgaagaagaaattg |
41684493 |
T |
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| Q |
513 |
attggttattcttccttcaatgctgctgcataatatcagtggatatgagatgtgtactgataaattgttgaaatataaga |
592 |
Q |
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| T |
41684492 |
attggttattcttccttcaatgctgctgcataatatcggtggatatgagatgtgtactgatcaattgttgaaatataaga |
41684413 |
T |
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