View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_5 (Length: 422)
Name: NF4020_low_5
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 27481583 - 27481853
Alignment:
| Q |
10 |
aataatatgcacaatggccatatttaggataagaaccgactaaaacgaggacacgtgcctatgcaacacattctttaacctgttagcagaaaattctttt |
109 |
Q |
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| T |
27481583 |
aataaaatgcacaatggccatatttaggataagaactgactaaaacgaggacacgtgcatatgcaacacattccttaacctgttagcagaaaattctttt |
27481682 |
T |
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| Q |
110 |
tagtttgcttttaagtagtgtgaaaaatttgattttgaactcaaaccaaacaaatgggaacgactatatttggatgaaagatgaaaaaatgtaattgaat |
209 |
Q |
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| T |
27481683 |
tagtttccttttaagttgtgtgaaaaatttgattttgaattcaatccaaacaaatgggaacgactatatttggatgaaagatgaaaaaatgtaattgaat |
27481782 |
T |
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| Q |
210 |
tggaaggnnnnnnnnnnctagttacaaaccccttttccacttaaagcaataattaccattgttcttaaacaca |
282 |
Q |
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| T |
27481783 |
tggaagg-aaaaaaaaactagttacaaatccc-tttccacttaaagcaataattaccattgttcttaaacaca |
27481853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 27488825 - 27488985
Alignment:
| Q |
10 |
aataatatgcacaatggccatatttaggataagaaccgactaaaacgaggacacgtgcctatgcaacacattctttaacctgttagcagaaaattctttt |
109 |
Q |
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| T |
27488825 |
aataaaatgcacaatggccatatttaggataagaactgactaaaacgaggacacgtgcatatgcaacacattctttaacatgttagcagaaaattctttt |
27488924 |
T |
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| Q |
110 |
tagtttgcttttaagtagtgtgaaaaatttgattttgaactcaaaccaaacaaatgggaac |
170 |
Q |
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| T |
27488925 |
tagtttcctcttaagttgcgtgaaaaatttgatttcgaattcaaaccaaacaaatgggaac |
27488985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 27481924 - 27481979
Alignment:
| Q |
351 |
aatgatcccaatgtgatttgaactctttctattgagaaaacacctaatgtttcaat |
406 |
Q |
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| T |
27481924 |
aatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgtttcaat |
27481979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 27489119 - 27489174
Alignment:
| Q |
351 |
aatgatcccaatgtgatttgaactctttctattgagaaaacacctaatgtttcaat |
406 |
Q |
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| T |
27489119 |
aatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgtttcaat |
27489174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 27488997 - 27489050
Alignment:
| Q |
228 |
tagttacaaaccccttttccacttaaagcaataattaccattgttcttaaacaca |
282 |
Q |
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| T |
27488997 |
tagttacaaaccgctttgc-acttaaagcaatagttaccattgttcttaaacaca |
27489050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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