View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_6 (Length: 416)
Name: NF4020_low_6
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 50550482 - 50550097
Alignment:
| Q |
1 |
ttcattgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccatgaagcaaaggatctt |
100 |
Q |
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| T |
50550482 |
ttcatcgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccgtgaagcaaaggatctt |
50550383 |
T |
|
| Q |
101 |
tgataatatcttgtacaagcagccaataataatcacaatatgaaatggcaagatagtactgagcttcaattcaactcgacgtcagcgtaaaaatcattta |
200 |
Q |
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| T |
50550382 |
tgataatatcttttacaagcagccaataataatcacaatatgaaatggcaagatagtagtgagcttcaattcaactcgacgtcagcgtaaaaataattta |
50550283 |
T |
|
| Q |
201 |
taatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagtttaatcaccacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50550282 |
taatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagtttaatcaccacta |
50550183 |
T |
|
| Q |
301 |
attcattttattttattaaaccaatgatgacaactttgtttctatttctacaattatcgattgcttattctagctatgaatttggg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50550182 |
attcattttattttattaaaccaatgatgacaactttgtttctatttctaaaattatcgattgcttattctagctatgaatttggg |
50550097 |
T |
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