View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_low_7 (Length: 405)
Name: NF4020_low_7
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 396
Target Start/End: Complemental strand, 24583010 - 24582621
Alignment:
| Q |
23 |
tatatatatacatatagaataccaaagattcatggaggtcgtacaatctctggctaatgcaatggaggaatgactcatctaagcatgaacaacgaggaca |
122 |
Q |
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| T |
24583010 |
tatatatatacatatagaataccaaagattcatggaggtcgtacaatctctggctaatgcaatggaggaatgactcatctaagcatgaacaacgaggaca |
24582911 |
T |
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| Q |
123 |
aaggccattcaaagcatggttccaatgattcaaaagagataaagtaggaattgagtcattacaagccatccaagtatgttcactcnnnnnnnnttgttgg |
222 |
Q |
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| T |
24582910 |
aaggccattcaaagcatggttccaatgattcaaaagagataaagtaggaattgagtcattacaagccatccaagtatgttcactcaaaaaaaattgttgg |
24582811 |
T |
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| Q |
223 |
a----------------tatgtttgatttcaagagttaaaacttttggtcccgtgattgaaaagtaaatttattagacttaacgatctaatcgattaagt |
306 |
Q |
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| T |
24582810 |
atatgttcacaaaatattatgtttgatttcaagagttaaaacttttggtcccgtgattgaaaagtaaatttattagacttaacgatctaatcgattaagt |
24582711 |
T |
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| Q |
307 |
ttaactaaattgattaggtaatacgttctaattgattaattgataaatctgattatatttgaatgatgaatacttgtttgtggcctttgc |
396 |
Q |
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| T |
24582710 |
ttaactaaattgattaggtaatacgttctaattgattaattgataaatctgattatatttgaatgatgaatacttgtttgtggcctttgc |
24582621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 11417984 - 11418102
Alignment:
| Q |
76 |
ctaatgcaatggaggaatgactcatctaagcatgaacaacgaggacaaaggccattcaaagcatggttccaatgattcaaaagagataaagtaggaattg |
175 |
Q |
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| T |
11417984 |
ctaatgcaatgaaggaaggactcatcaaaggatgaacatcgaggacagaggccattaggggcttggttctgatgattcaaaagagatgtagtagggatag |
11418083 |
T |
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| Q |
176 |
agtcattacaagccatcca |
194 |
Q |
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| T |
11418084 |
aatcataacaagccatcca |
11418102 |
T |
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