View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4021_high_1 (Length: 568)
Name: NF4021_high_1
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4021_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 30273412 - 30273678
Alignment:
| Q |
20 |
atagcatccacaggtgttcggtatggtagacgaatcagggatgaagctttgctgcaaaagcaaacaagaaattacctccatcatctctaagaactccttt |
119 |
Q |
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| T |
30273412 |
atagcatccacaggtgttcggtgtggtagacgaa------atgaagctttgctgcaaaagcaaacaagaaattacctccatcatctctaagaactccttt |
30273505 |
T |
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| Q |
120 |
tggttgttttgtactctacagctatttgaagtctagtgatatctttattttgagctgcgcaacgtctttaaaaagaatctaattttaaaaattgttgttg |
219 |
Q |
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| T |
30273506 |
tggttgttttgtactctacagctatttgaagtctagtgatatctttattttgagctgcgcaacatctttaaaaggaatctaattttaaaaattgttgttg |
30273605 |
T |
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| Q |
220 |
gaaatatatgtttgtaaatagaattatgatactttaaaatgttgaaaatacatgtcaaagttcagtaccaatt |
292 |
Q |
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| T |
30273606 |
gaaatatatgtttgtaaatagaattatgatactttaaaatgttgaaaatacatgtcaaagttcagtaccaatt |
30273678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 356 - 560
Target Start/End: Original strand, 30273742 - 30273946
Alignment:
| Q |
356 |
gttgttagacttgtcctcctagaggatttgggtcatgagattaggtctgatgcacatatttacattagcatgaagacatcaaataagtcaaataggcttt |
455 |
Q |
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| T |
30273742 |
gttgttagacttgtcctcctagaggatttgggtcatgagattaggtctgatgcacatatttacattagcatgaagacatcaaataagtcaaataggcttt |
30273841 |
T |
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| Q |
456 |
agactaaagtggaaaactaagattgactcnnnnnnnngtggaaagctaaaattatatagatatattttgaagaaattatacagtggtaagtctgtgctcc |
555 |
Q |
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| T |
30273842 |
agactaaagtggaaaactaagattgactcaaaaaaaagtggaaagctaaaattatatagatatattttgaagaaattatacagtggtaagtcagtgttac |
30273941 |
T |
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| Q |
556 |
tcctc |
560 |
Q |
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| T |
30273942 |
tcctc |
30273946 |
T |
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