View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4021_high_10 (Length: 250)
Name: NF4021_high_10
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4021_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 38913022 - 38913171
Alignment:
| Q |
91 |
acaatgactaggaacagtgccaaaacgactaggatcaggaaatcttaattcgaacgtatctacagctcagaacaaacttttccttatttcctattcgatt |
190 |
Q |
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| T |
38913022 |
acaatgactaggaacagtgccaaaacgactaggatcaggaaatcttaattcgaacgtatctacagctcagaacaaacttttccttatttcctattcgatt |
38913121 |
T |
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| Q |
191 |
ctagaaacagccaaacactcctaaacacaacttctggaacataccctttg |
240 |
Q |
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| T |
38913122 |
ctagaaacagccaaacactcctaaacacaacttctggaacataccctttg |
38913171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38912977 - 38913023
Alignment:
| Q |
1 |
attcagttgaatgattatgggagtgtacaaaagtgtttattataaac |
47 |
Q |
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| T |
38912977 |
attcagttgaatgattatgggagtgtacaaaagtgtgtattataaac |
38913023 |
T |
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