View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4021_high_2 (Length: 526)
Name: NF4021_high_2
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4021_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 42933296 - 42933793
Alignment:
| Q |
18 |
acatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttggtaaaatcaccaacatgatca |
117 |
Q |
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| T |
42933296 |
acatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttggtaaaatcaccaatatgatca |
42933395 |
T |
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| Q |
118 |
agaatgttccacctcatcttagagatcatactatgagttctattatttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcat |
217 |
Q |
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| T |
42933396 |
agaatgttccacctcatcttagagatcataccatgagttctattatttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcat |
42933495 |
T |
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| Q |
218 |
tcaacagcttcaatctcaatatgaattttatcaagctgagcttcattttacacgtcaacaaatttctatttgtaaagctacacaatca---------caa |
308 |
Q |
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| T |
42933496 |
tcaacagcttcaatctcaatatgaattttatcaagctgagcttcatcttacacgtcaacaaatttctatttgtaaagctacacaatcacaacaacatcaa |
42933595 |
T |
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| Q |
309 |
caacaatttgcctctgtggctaatcatcattataatgacatgcatgtcattaatcataacaataacgaggataatgatgctgctttgaatattatcaatc |
408 |
Q |
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| T |
42933596 |
caacaatttgccgctgtgtctaatcatcattataatgacatgcatgtcattaatcataacaataacgaggataatgatgctgctttgaatattatcaatc |
42933695 |
T |
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| Q |
409 |
attttaaccagcagcattttgttgatgatcaactgaatatgaatatgaatatgctgcctcaacagcaattgcaactgcagcaacaatatgttgtcgatga |
508 |
Q |
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| T |
42933696 |
attttaaccagcagcattttgttgatgatcaac------tgaatatgaatatgctgcctcaacagcaattgcaactgcagcagcaatatgttgtcgatga |
42933789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 5747366 - 5747292
Alignment:
| Q |
162 |
atttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaa |
236 |
Q |
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| T |
5747366 |
atttttcaatctgatatgcgggctaatgatcctgttggtggttgttataaatatattcaagatcttcaagctcaa |
5747292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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