View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4021_high_4 (Length: 439)
Name: NF4021_high_4
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4021_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 7289845 - 7290265
Alignment:
| Q |
17 |
acttaactcatgaatgttttgttgttttgtatgttgcacctattttgataccttacaatagttcaaaattgtgctttcggcatccactgtattatgggca |
116 |
Q |
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| T |
7289845 |
acttaactcatgaatgttttgttgttttgtatgttgcacctattttgataccttaaaatagtttgaaattgtgcttccggcatccactgtattatgggca |
7289944 |
T |
|
| Q |
117 |
actttgcattttatttcatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctgatgtgt |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289945 |
actttgcattttattacatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctgatgtgt |
7290044 |
T |
|
| Q |
217 |
acttttatatttcttatattatgaatcttatatgtttgtagtttaatacaaacaacaacttaaaattctctatttgaatattaaagcaatggattttcta |
316 |
Q |
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||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7290045 |
acttttatatttcttatattatgaatcctatatggtggtagtttaatacaaacaacaacttaaaattctctatttgagtattaaagcaatggattttcta |
7290144 |
T |
|
| Q |
317 |
gcagctatcagttatttttctccttttattaatattcacattgtggatatattgggtattaaggattgtagtgtttctttaagagtatcagtaatcaatg |
416 |
Q |
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| T |
7290145 |
gcagctatcagttatttttctccttttattaatattcacattgtggatatattggatattaaggattgtagtgtttctttaagagtatcagtaatcaatg |
7290244 |
T |
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| Q |
417 |
attatattccttatattcttg |
437 |
Q |
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| T |
7290245 |
attatattccttgtattcttg |
7290265 |
T |
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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 34452393 - 34452469
Alignment:
| Q |
288 |
atttgaatattaaagcaat--ggattttctagcagctatcagttatttttctcc-ttttattaatattcacattgtg |
361 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
34452393 |
atttgagtattaaagcaatatggattttctagcagctatcagttatttctctccttttttttaatattcacattgtg |
34452469 |
T |
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