View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4021_low_14 (Length: 225)
Name: NF4021_low_14
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4021_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 6016683 - 6016583
Alignment:
| Q |
111 |
aatttatgtgattttctgaaagtgaccctatatgtagaaaaagaggtattaattctattttcacttttcctaatacagtgtagctcaatggttgttcatt |
210 |
Q |
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| T |
6016683 |
aatttatgtgattttctgaaagtgaccctatatgtagaaaaagaggtattaattctattttcacttttcctaatacagtgtagctcaatggttgttcatt |
6016584 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
6016583 |
t |
6016583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 6016775 - 6016733
Alignment:
| Q |
18 |
gttaaacttataatatcatatcaattgtcaacaatgttgtacc |
60 |
Q |
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| T |
6016775 |
gttaaacttataatatcatatcaattgtcaacaatgttgtacc |
6016733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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