View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4021_low_5 (Length: 411)

Name: NF4021_low_5
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4021_low_5
NF4021_low_5
[»] chr3 (5 HSPs)
chr3 (7-111)||(48766359-48766463)
chr3 (292-370)||(48765926-48766004)
chr3 (2-110)||(25452664-25452771)
chr3 (224-282)||(48766278-48766336)
chr3 (2-85)||(17229688-17229771)
[»] chr5 (1 HSPs)
chr5 (2-108)||(13136662-13136768)
[»] chr1 (4 HSPs)
chr1 (2-110)||(38953598-38953705)
chr1 (2-110)||(30198237-30198344)
chr1 (2-72)||(47244050-47244120)
chr1 (63-96)||(43632852-43632885)
[»] chr7 (3 HSPs)
chr7 (2-110)||(22042096-22042205)
chr7 (2-96)||(14670528-14670622)
chr7 (54-110)||(27446540-27446596)
[»] chr4 (1 HSPs)
chr4 (2-111)||(48425732-48425838)
[»] chr6 (2 HSPs)
chr6 (5-93)||(11106800-11106888)
chr6 (3-86)||(3535535-3535619)
[»] chr2 (1 HSPs)
chr2 (2-96)||(40799868-40799962)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48766463 - 48766359
Alignment:
Q  7 tgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaatcata 106  Q
    ||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  48766463 tgtgaaattgtgattaaatctgaaccgacggatctcatatctacggttgagatgtgctacagcgtgcaactgcgtgtaatatttacagcaacaaatccta 48766364  T
Q  107 atcca 111  Q
    |||||    
T  48766363 atcca 48766359  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 48766004 - 48765926
Alignment:
Q  292 actttcttggcttgtacacaacttgactagcaaggcttgaattgcacactatataactaatctacttgatagttgacaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48766004 actttcttggcttgtacacaacttgactagcaaggcttgaattgcacactatataactaatctacttcatagttgacaa 48765926  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 25452664 - 25452771
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaa 101  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||| ||||||||| || ||| ||||||| || ||||    
T  25452664 tactgtgtgaaactgtgattaaatctggaccgacggatctcatatctactgttgagatatgctacagtgtgcaactgcgtttaa-atttacaacagcaaa 25452762  T
Q  102 tcataatcc 110  Q
    || ||||||    
T  25452763 tcctaatcc 25452771  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 48766336 - 48766278
Alignment:
Q  224 aagtatgatttacgtgagccccaaggttattttttaaaaacaacttaagtattcaaaat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48766336 aagtatgatttacgtgagccccaaggttattttttaaaaacaacttaagtattcaaaat 48766278  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 17229688 - 17229771
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaa 85  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||| ||||||    
T  17229688 tactgtgtaagactgtgattaaatctggaccgatggatctcatatctacggttgaaatgtactacagcgtgcaactgcgtgtaa 17229771  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 13136662 - 13136768
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaa 101  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  13136662 tactgtgtaaaactgtgattaaatctggaccgacggatctcatatctacggttgagatgtgctaccgcgtgtaactgcgtgtaatatttacagcagcaaa 13136761  T
Q  102 tcataat 108  Q
    || ||||    
T  13136762 tcctaat 13136768  T

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Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 38953598 - 38953705
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaa 101  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| ||| | ||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  38953598 tactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagatgtgctacagcgtgcaactgcgtgtaa-atttacagcagcaaa 38953696  T
Q  102 tcataatcc 110  Q
    || ||||||    
T  38953697 tcctaatcc 38953705  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 30198237 - 30198344
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaa 101  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||||||||||| |||||| ||||||| || ||||    
T  30198237 tactgtgtgaaactgtgattaaatctgaaccaatggatatcaaatctataattgagatgtgctacagcgtgcaactgcgtgtaa-atttacaccagcaaa 30198335  T
Q  102 tcataatcc 110  Q
    || ||||||    
T  30198336 tcctaatcc 30198344  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 47244050 - 47244120
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtg 72  Q
    ||||||||||||| |||||||||| |||||| |  |||||||||| |||  |||||||||||||| |||||    
T  47244050 tactgtgtgaaaccgtgattaaatatggaccgactgatctcatatttacgtttgagatgtgctactgcgtg 47244120  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 43632885 - 43632852
Alignment:
Q  63 ctacagcgtgcaactgtgtgtaatatttacagca 96  Q
    |||||||||||||||| |||||||||||||||||    
T  43632885 ctacagcgtgcaactgcgtgtaatatttacagca 43632852  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 22042205 - 22042096
Alignment:
Q  2 tactgtgtgaaactgtgattaaa-tctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaa 100  Q
    |||||||| |||||||||||||| |||| ||| || ||||||||||||||  ||||||| |||||||||||||||||  |||||||||||||||||  ||    
T  22042205 tactgtgtaaaactgtgattaaaatctgaaccgatcgatctcatatctacgattgagatatgctacagcgtgcaactacgtgtaatatttacagcagaaa 22042106  T
Q  101 atcataatcc 110  Q
    ||||||||||    
T  22042105 atcataatcc 22042096  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 14670528 - 14670622
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgct-acagcgtgcaactgtgtgtaatatttacagca 96  Q
    |||||||||||||||||||||| |||| ||| |  |||||||||||||||||||||||||||| | |||||||||||| |||||| ||||| ||||    
T  14670528 tactgtgtgaaactgtgattaagtctg-accgacagatctcatatctacagttgagatgtgctcagagcgtgcaactgcgtgtaacatttatagca 14670622  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 27446596 - 27446540
Alignment:
Q  54 tgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaatcataatcc 110  Q
    |||||||| |||||||||||||||| |||| ||||||||||||  ||||| ||||||    
T  27446596 tgagatgtactacagcgtgcaactgcgtgtgatatttacagcatgaaatcctaatcc 27446540  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 48425732 - 48425838
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagcaacaaa 101  Q
    ||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||  ||||||||||||||||||||||  ||||| ||||||| || ||||    
T  48425732 tactgtgtgaaactgtgattagatctgaaccgacggatctcatatctacggtt--gatgtgctacagcgtgcaactgcatgtaa-atttacaacagcaaa 48425828  T
Q  102 tcataatcca 111  Q
    || |||||||    
T  48425829 tcctaatcca 48425838  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 11106800 - 11106888
Alignment:
Q  5 tgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttaca 93  Q
    ||||||||| |||||||||||||||| | | | || |||||||||| |||||||||||||||| ||||||| || ||||||||||||||    
T  11106800 tgtgtgaaattgtgattaaatctggatcgacgaatgtcatatctacggttgagatgtgctacatcgtgcaaatgcgtgtaatatttaca 11106888  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 3535535 - 3535619
Alignment:
Q  3 actgtgtgaaactgtgattaaat-ctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaat 86  Q
    ||||| ||||||||||||||||  ||||||| |  ||||||||||| |  |||||||| ||||||| ||||||||| ||| ||||    
T  3535535 actgtatgaaactgtgattaaaaactggaccgaccgatctcatatccatggttgagatatgctacatcgtgcaactatgtctaat 3535619  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 40799868 - 40799962
Alignment:
Q  2 tactgtgtgaaactgtgattaaatctggaccaatggatctcatatctacagttgagatgtgctacagcgtgcaactgtgtgtaatatttacagca 96  Q
    |||| ||||||||| |||||||||||||||| |  ||  |||||||||| ||||||||||| || |||||||||||| |||| ||||||| ||||    
T  40799868 tactttgtgaaactttgattaaatctggaccgactgaattcatatctacggttgagatgtgttatagcgtgcaactgcgtgtgatatttagagca 40799962  T

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