View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4021_low_8 (Length: 298)

Name: NF4021_low_8
Description: NF4021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4021_low_8
NF4021_low_8
[»] chr1 (2 HSPs)
chr1 (110-298)||(6574059-6574234)
chr1 (18-47)||(6574297-6574326)
[»] chr2 (3 HSPs)
chr2 (112-168)||(3476463-3476519)
chr2 (112-168)||(44439249-44439305)
chr2 (263-298)||(42832234-42832269)
[»] chr4 (3 HSPs)
chr4 (112-184)||(29728964-29729036)
chr4 (126-176)||(2206766-2206816)
chr4 (112-166)||(2206377-2206431)
[»] chr6 (3 HSPs)
chr6 (113-168)||(31305882-31305937)
chr6 (261-297)||(10649371-10649407)
chr6 (262-298)||(31385012-31385048)
[»] chr8 (1 HSPs)
chr8 (112-170)||(38203279-38203337)
[»] chr7 (2 HSPs)
chr7 (112-166)||(30182330-30182383)
chr7 (261-298)||(9778587-9778624)
[»] chr5 (2 HSPs)
chr5 (118-166)||(11132825-11132873)
chr5 (112-164)||(42857889-42857941)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 110 - 298
Target Start/End: Complemental strand, 6574234 - 6574059
Alignment:
Q  110 tgaaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattctagtcgagagcaaccaattgtggaatcaaatatacagtgagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6574234 tgaaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattctagtcgagagcaaccaattgtggaatcaaatatacagcgagt 6574135  T
Q  210 gatgctgattagaatttgttagaacttgaagctaagatttgtagctttcgactatgaagcaaggtcactccttggattaggcgtgtccc 298  Q
    |||||||||||||||||||||||||             ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6574134 gatgctgattagaatttgttagaac-------------ttgtagctttcgactatgaagcacggtcactccttggattaggcgtgtccc 6574059  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 6574326 - 6574297
Alignment:
Q  18 aagtcccccaatctaaaactctttttcttc 47  Q
    ||||||||||||||||||||||||||||||    
T  6574326 aagtcccccaatctaaaactctttttcttc 6574297  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 3476463 - 3476519
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattct 168  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3476463 aaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 3476519  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 44439305 - 44439249
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattct 168  Q
    ||||| |||| || |||||||||||| || ||||||||| |||||||||||||||||    
T  44439305 aaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattct 44439249  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 42832234 - 42832269
Alignment:
Q  263 atgaagcaaggtcactccttggattaggcgtgtccc 298  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42832234 atgaagcaaggacactccttggattaggcgtgtccc 42832269  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 29729036 - 29728964
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattctagtcgagagcaaccaa 184  Q
    ||||| ||||||  |||||||||||  |||||||| ||| |||||| ||||||||||| ||||||||||||||    
T  29729036 aaaatcaattcttgaatcaaaagcttcaatttttaacttcaagttataatcaattctactcgagagcaaccaa 29728964  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 2206766 - 2206816
Alignment:
Q  126 aatcaaaagctctaatttttagcttaaagttagaatcaattctagtcgaga 176  Q
    |||||||||||| |||||||||||  |||||||||||||||||| ||||||    
T  2206766 aatcaaaagctccaatttttagctgcaagttagaatcaattctactcgaga 2206816  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 2206377 - 2206431
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaatt 166  Q
    ||||| ||| ||| |||||||||||| |||||||||||| ||| |||||||||||    
T  2206377 aaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaatt 2206431  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 31305882 - 31305937
Alignment:
Q  113 aaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattct 168  Q
    |||| ||||||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  31305882 aaatcaattctagaatcaaaagctccaatttttagcttcaagttagaatcagttct 31305937  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 10649407 - 10649371
Alignment:
Q  261 ctatgaagcaaggtcactccttggattaggcgtgtcc 297  Q
    |||||||||| || |||||||||||||||||||||||    
T  10649407 ctatgaagcacggacactccttggattaggcgtgtcc 10649371  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 31385048 - 31385012
Alignment:
Q  262 tatgaagcaaggtcactccttggattaggcgtgtccc 298  Q
    ||||||||| || ||||||||||||||||||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtccc 31385012  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 38203337 - 38203279
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattctag 170  Q
    ||||||||||||| ||||| || |||||||||||| ||| |||||||||| || |||||    
T  38203337 aaaattaattctagaatcataacctctaatttttaacttcaagttagaataaactctag 38203279  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 30182330 - 30182383
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaatt 166  Q
    ||||||||||||| |||||||||||  |||||||||||| ||| |||||||||||    
T  30182330 aaaattaattctagaatcaaaagctacaatttttagcttcaag-tagaatcaatt 30182383  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 9778624 - 9778587
Alignment:
Q  261 ctatgaagcaaggtcactccttggattaggcgtgtccc 298  Q
    |||||||||| || ||||||||||||||||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtccc 9778587  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11132825 - 11132873
Alignment:
Q  118 aattctacaatcaaaagctctaatttttagcttaaagttagaatcaatt 166  Q
    ||||||||||| |||||||  ||||| |||||| |||||||||||||||    
T  11132825 aattctacaataaaaagctacaatttgtagcttcaagttagaatcaatt 11132873  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 42857941 - 42857889
Alignment:
Q  112 aaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaa 164  Q
    ||||| ||||||| ||||| |||||||||||| || ||| |||||||||||||    
T  42857941 aaaatcaattctataatcagaagctctaatttctaacttcaagttagaatcaa 42857889  T

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