View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4022_low_1 (Length: 287)
Name: NF4022_low_1
Description: NF4022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4022_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 29949347 - 29949555
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29949347 |
taattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
29949446 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29949447 |
tccaacaattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
29949546 |
T |
|
| Q |
201 |
ataacatat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
29949547 |
ataacatat |
29949555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 30005652 - 30005922
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30005652 |
taattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
30005751 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||| |||||||| | || ||| |
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|
| T |
30005752 |
tccaactattatcatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcgtttttgcaagtcgaccaaaggttcaaggatcagatctc |
30005851 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
30005852 |
atgtcttatggttccaaagggatggctttttctgagtatggtccttattggcgtagtgtgaggaaattttg |
30005922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 29962905 - 29963175
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29962905 |
taataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaagt |
29963004 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||| | || | ||| |
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|
| T |
29963005 |
tccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagctc |
29963104 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29963105 |
attttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttg |
29963175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 30011893 - 30011623
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30011893 |
taataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaagt |
30011794 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||| | || | ||| |
|
|
| T |
30011793 |
tccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagctc |
30011694 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30011693 |
attttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttg |
30011623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 30071332 - 30071062
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30071332 |
taattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
30071233 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||||||| ||||||| ||||||| |||| ||| |
|
|
| T |
30071232 |
tccaactattatcatttcatcttcaaaagctgcagaatcatttctcaaaacccatgacatcgtttttgcaagccgaccaaagagtcaaggatctgagctc |
30071133 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| |||||||||||||||| | | ||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
30071132 |
atgttatatggttccaaagggatagttttttctgactatggtccttattggcgtagtgtgaggaaattttg |
30071062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 30045502 - 30045232
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045502 |
taatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
30045403 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
||| ||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||| |||| ||| |
|
|
| T |
30045402 |
cccagctattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccacgacatcgttttcgcaagccgaccaaagattcaaggatctgagctc |
30045303 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| | ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30045302 |
atgtcttatggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgtgaggaaattttg |
30045232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 29999214 - 29999484
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999214 |
taataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttacaacttggtcaagt |
29999313 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||| ||| | ||||| |||||||||| |||||||||||||||||||| || |||||| || |||||||| || |||||||||||| | || ||| |
|
|
| T |
29999314 |
tccaacaattgttatttcatcttcaaaaggagcagaatcattcctcaaaacccatgacatcgttttcgcaagccgaccgaagattcaaggatcagagctc |
29999413 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|| | |||||||| ||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||| |
|
|
| T |
29999414 |
atgtcctatggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttg |
29999484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 29990510 - 29990777
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
29990510 |
taataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggacaagt |
29990609 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
|||||| ||| | ||||| ||||||||||| |||||||||||||||||||| || |||||| || |||| ||| || || || |||| | || || |
|
|
| T |
29990610 |
tccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgttttcgcaaaccgaccgaaacttataggagcagagatc |
29990709 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaact |
268 |
Q |
| |
|
||| | ||||||| |||||||||||| ||||||||||| | ||||||||||||||||| | |||||| |
|
|
| T |
29990710 |
atatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaact |
29990777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29943679 - 29943950
Alignment:
| Q |
1 |
taataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29943679 |
taatcggaaacctccacatattaggcacccttccacatagaacacttcaatcactctccaaacaatatggtccaatcatgtccttacaactaggtcaagt |
29943778 |
T |
|
| Q |
101 |
tccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaactc |
200 |
Q |
| |
|
||| ||||| | ||||| ||||||||||| ||||| |||||| ||||||| || |||||| || |||| ||| || | || |||| | | || |
|
|
| T |
29943779 |
cccagctattgtcatttcatcttcaaaagccgcagagtcattcgtcaaaacccatgacatcgttttcgcaaaccgaccggaacttgtaggagcacagatc |
29943878 |
T |
|
| Q |
201 |
ataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgt |
272 |
Q |
| |
|
|| | ||||||| |||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
29943879 |
atgtcttatggttgcaaagggttggcgttttctaagtacgactcttattggcgtagtgtgagaaaactttgt |
29943950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 29951998 - 29952070
Alignment:
| Q |
199 |
tcataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29951998 |
tcatcacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttg |
29952070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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