View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4022_low_4 (Length: 238)
Name: NF4022_low_4
Description: NF4022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4022_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 42334918 - 42334779
Alignment:
| Q |
1 |
ttcttttctaacaaggttgtcgtcattattctaatgcctaannnnnnnattttatttgaaagaccatgaatatgatattattagaataattatcatttaa |
100 |
Q |
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| T |
42334918 |
ttcttttctaacaaggttgtcgtcattattctaatgcctaatttttt-attttatttgaaagaccatgaatatgatattattagaataattatcatttaa |
42334820 |
T |
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| Q |
101 |
aaagttggacctcaagaatcttgcacgtcaagaaacatatg |
141 |
Q |
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| T |
42334819 |
aaagttggacctcaagaatcttgcacgtcaagaaacatatg |
42334779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 7607602 - 7607673
Alignment:
| Q |
140 |
tgtttataattggagacaattttcacctcaaa--ccgattttgtgaagttgtgttagacccaaccatgattt |
209 |
Q |
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| T |
7607602 |
tgtttataagtggagacaatcttcacctcacaagccggttttgtggagttgtgttaggcccaaccatgattt |
7607673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 6906624 - 6906682
Alignment:
| Q |
79 |
tattagaataattatcatttaaaaagttggacctcaagaatcttgcacgtcaagaaaca |
137 |
Q |
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| T |
6906624 |
tattagaataattatcattatgaaacttggacctcaaggatcttgcacctcaagaaaca |
6906682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 24013611 - 24013553
Alignment:
| Q |
79 |
tattagaataattatcatttaaaaagttggacctcaagaatcttgcacgtcaagaaaca |
137 |
Q |
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| T |
24013611 |
tattagaataattatcattaagaaacttggacttcaaggatcttgcacctcaagaaaca |
24013553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 26029003 - 26028971
Alignment:
| Q |
172 |
ccgattttgtgaagttgtgttagacccaaccat |
204 |
Q |
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| T |
26029003 |
ccgattttgtgaggttgtgttagacccaaccat |
26028971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 48243475 - 48243435
Alignment:
| Q |
176 |
ttttgtgaagttgtgttagacccaaccatgatttttgagat |
216 |
Q |
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| T |
48243475 |
ttttgtggggttgtgttagacccaaccatgatttttaagat |
48243435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 9398131 - 9398097
Alignment:
| Q |
169 |
aaaccgattttgtgaagttgtgttagacccaacca |
203 |
Q |
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| T |
9398131 |
aaaccgattttgtgaagttgtgttagatccaacca |
9398097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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