View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4023_high_3 (Length: 355)
Name: NF4023_high_3
Description: NF4023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4023_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1702327 - 1701991
Alignment:
| Q |
1 |
agactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcgatttattaaatacac |
100 |
Q |
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| T |
1702327 |
agactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcgatttattaaatacac |
1702228 |
T |
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| Q |
101 |
cgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgca |
200 |
Q |
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| T |
1702227 |
cgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgca |
1702128 |
T |
|
| Q |
201 |
ataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcgg |
300 |
Q |
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| T |
1702127 |
ataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcgg |
1702028 |
T |
|
| Q |
301 |
tgtagagggatttaactttgtatgaaaacatagtttc |
337 |
Q |
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| T |
1702027 |
tgtagagggatttaactttgtatgaaaacatagtttc |
1701991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 321
Target Start/End: Complemental strand, 5400962 - 5400743
Alignment:
| Q |
102 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
201 |
Q |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
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| Q |
202 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
301 |
Q |
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| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
5400763 |
T |
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| Q |
302 |
gtagagggatttaactttgt |
321 |
Q |
| |
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||| | ||||| ||||||| |
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| T |
5400762 |
gtaaatagatttgactttgt |
5400743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 321
Target Start/End: Complemental strand, 3541937 - 3541718
Alignment:
| Q |
102 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
201 |
Q |
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|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
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| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
|
| Q |
202 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
301 |
Q |
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| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
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| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
3541738 |
T |
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| Q |
302 |
gtagagggatttaactttgt |
321 |
Q |
| |
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||| | ||||| ||||||| |
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| T |
3541737 |
gtaaatagatttgactttgt |
3541718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
168 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
229 |
Q |
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||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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