View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4023_low_1 (Length: 443)
Name: NF4023_low_1
Description: NF4023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4023_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 1702762 - 1702322
Alignment:
| Q |
1 |
ttccagtaagtgatctcgtggaagagttagtgggaacttgagaaatttgaggagataaagttggagtacgtgtagtgagggagataagaagtgtagggat |
100 |
Q |
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| T |
1702762 |
ttccagtaagtgatctcgtggaagagttagtgggaacttgagaaatttgaggagataaagttggagtacgtgtagtgggggagataagaggtgtagggat |
1702663 |
T |
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| Q |
101 |
aagtgatgagtttgaattttgaggagaagatgaaggaataataggatggctaaggtgttgaataataagaggatgatgagaaggaaagtgcttgttagtg |
200 |
Q |
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| T |
1702662 |
aagtgatgagtttgaattttgaggagaaggtggaggaataataggatggttaaggtgttgaataataagaggatgatgagaaggaaagtgtttgctagtg |
1702563 |
T |
|
| Q |
201 |
tttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaat-aaaattgaaagagtgactcatgaaaggtgacgtgtcttgagagataca |
299 |
Q |
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| T |
1702562 |
tttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaaatggaaagagtgactcatgaaaggtgacgtgtcttgagagataca |
1702463 |
T |
|
| Q |
300 |
acttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagaatagccaaagaaaacacatggcatgcttcgattggataacttattttgaga |
399 |
Q |
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| T |
1702462 |
acttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagagtagccaaagaaaacacatggcatgcttcgattggataacttattttgaga |
1702363 |
T |
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| Q |
400 |
gtatggtcgaagccatgggtagcacagatatccaaagactc |
440 |
Q |
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| T |
1702362 |
gtatggtcgaagccatgggtagcacagacatccaaagactc |
1702322 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
284 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
342 |
Q |
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| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
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