View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4023_low_6 (Length: 277)

Name: NF4023_low_6
Description: NF4023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4023_low_6
NF4023_low_6
[»] chr3 (14 HSPs)
chr3 (1-277)||(5004399-5004675)
chr3 (1-277)||(46404280-46404543)
chr3 (1-218)||(16975629-16975847)
chr3 (1-137)||(7336373-7336509)
chr3 (5-138)||(43277729-43277858)
chr3 (59-226)||(11937566-11937735)
chr3 (195-277)||(16975534-16975616)
chr3 (69-186)||(9104522-9104640)
chr3 (199-277)||(11937744-11937822)
chr3 (17-59)||(43277702-43277744)
chr3 (59-110)||(17542393-17542444)
chr3 (141-204)||(17542446-17542508)
chr3 (65-177)||(8731156-8731269)
chr3 (65-177)||(9083043-9083156)
[»] chr6 (10 HSPs)
chr6 (1-277)||(10751239-10751515)
chr6 (1-277)||(34636451-34636714)
chr6 (1-196)||(23260293-23260489)
chr6 (59-226)||(32449954-32450122)
chr6 (93-203)||(26182412-26182522)
chr6 (202-277)||(32450134-32450209)
chr6 (60-111)||(13773121-13773172)
chr6 (235-277)||(23260483-23260525)
chr6 (94-174)||(20555629-20555709)
chr6 (64-130)||(24163327-24163395)
[»] chr1 (19 HSPs)
chr1 (1-277)||(37666857-37667133)
chr1 (1-137)||(43407046-43407182)
chr1 (1-137)||(338499-338635)
chr1 (1-137)||(8421953-8422089)
chr1 (59-226)||(35761741-35761909)
chr1 (5-137)||(9537070-9537206)
chr1 (5-121)||(33007334-33007450)
chr1 (59-226)||(19198451-19198622)
chr1 (17-173)||(16075097-16075252)
chr1 (199-277)||(35761918-35761996)
chr1 (22-137)||(25921879-25921992)
chr1 (4-73)||(9537030-9537099)
chr1 (17-70)||(33007307-33007360)
chr1 (59-110)||(6836394-6836445)
chr1 (69-111)||(18472635-18472677)
chr1 (17-73)||(9537004-9537060)
chr1 (62-130)||(28561815-28561885)
chr1 (120-177)||(6836253-6836310)
chr1 (157-211)||(16075096-16075150)
[»] chr5 (15 HSPs)
chr5 (1-277)||(537084-537347)
chr5 (59-277)||(4557694-4557916)
chr5 (1-137)||(40691266-40691402)
chr5 (17-211)||(30910117-30910309)
chr5 (5-211)||(38001301-38001503)
chr5 (59-111)||(25101617-25101669)
chr5 (59-111)||(25160710-25160762)
chr5 (17-69)||(38001478-38001530)
chr5 (59-110)||(6309186-6309237)
chr5 (141-210)||(6309116-6309184)
chr5 (17-76)||(27026847-27026905)
chr5 (74-111)||(42861832-42861869)
chr5 (20-82)||(6309107-6309166)
chr5 (159-208)||(25101724-25101773)
chr5 (159-208)||(25160817-25160866)
[»] chr7 (18 HSPs)
chr7 (3-277)||(15873656-15873917)
chr7 (1-137)||(10288470-10288606)
chr7 (5-137)||(40106201-40106333)
chr7 (69-226)||(22077977-22078135)
chr7 (7-186)||(11036031-11036210)
chr7 (17-211)||(12911388-12911581)
chr7 (17-137)||(12196391-12196511)
chr7 (69-226)||(21491194-21491353)
chr7 (44-133)||(49170023-49170114)
chr7 (71-212)||(18367030-18367173)
chr7 (195-277)||(21491358-21491440)
chr7 (17-82)||(40106294-40106360)
chr7 (195-277)||(18367192-18367274)
chr7 (107-186)||(9993633-9993712)
chr7 (59-111)||(48653534-48653586)
chr7 (160-211)||(12196497-12196548)
chr7 (69-135)||(9993756-9993822)
chr7 (157-210)||(48653595-48653648)
[»] scaffold0413 (1 HSPs)
scaffold0413 (115-277)||(9119-9281)
[»] chr4 (15 HSPs)
chr4 (1-187)||(40459293-40459478)
chr4 (5-137)||(55162545-55162676)
chr4 (59-226)||(49499403-49499572)
chr4 (1-137)||(28968918-28969059)
chr4 (5-130)||(13652932-13653058)
chr4 (5-130)||(13661057-13661183)
chr4 (1-82)||(55162638-55162719)
chr4 (63-111)||(2761801-2761849)
chr4 (59-110)||(69782-69833)
chr4 (195-277)||(49499316-49499398)
chr4 (120-177)||(69635-69692)
chr4 (141-210)||(69712-69780)
chr4 (20-82)||(69703-69762)
chr4 (28-70)||(13653032-13653074)
chr4 (28-70)||(13661157-13661199)
[»] chr2 (16 HSPs)
chr2 (1-137)||(40447872-40448008)
chr2 (1-137)||(40729106-40729242)
chr2 (24-211)||(18292396-18292582)
chr2 (5-137)||(41339936-41340068)
chr2 (17-174)||(28266807-28266964)
chr2 (17-137)||(34397514-34397632)
chr2 (67-174)||(12774137-12774244)
chr2 (20-73)||(41339912-41339965)
chr2 (59-110)||(44789002-44789053)
chr2 (72-111)||(35670502-35670541)
chr2 (93-177)||(29270994-29271078)
chr2 (157-211)||(36731989-36732043)
chr2 (157-210)||(12774190-12774243)
chr2 (69-130)||(36731900-36731961)
chr2 (20-80)||(44788925-44788982)
chr2 (141-210)||(44788932-44789000)
[»] scaffold1838 (2 HSPs)
scaffold1838 (5-137)||(577-709)
scaffold1838 (17-82)||(670-736)
[»] chr8 (7 HSPs)
chr8 (24-136)||(41958124-41958236)
chr8 (58-137)||(44436513-44436592)
chr8 (60-166)||(40841215-40841322)
chr8 (69-111)||(22635730-22635772)
chr8 (69-110)||(22816023-22816064)
chr8 (71-111)||(3189139-3189179)
chr8 (159-210)||(3189234-3189288)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-109)||(32991-33078)
[»] scaffold0013 (2 HSPs)
scaffold0013 (59-110)||(242732-242783)
scaffold0013 (120-177)||(242878-242935)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 5004399 - 5004675
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004399 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 5004498  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5004499 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgc 5004598  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5004599 cactaaggcaaactcatagacaaatacagtaagatattaacacatcatcatccacatggaccaaactgaaatatttt 5004675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 46404280 - 46404543
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |    
T  46404280 cagaaatataattgcaattcccaccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacaa 46404379  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||||    
T  46404380 acatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatcc-------------ccacaaagaaatatattattaacccgc 46404466  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46404467 cacgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatatttt 46404543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16975847 - 16975629
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  16975847 cagaaatataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactatggcaccacacagatgcatatgccatggatga 16975748  T
Q  101 tcatgaaaatgcagactaaaa-cccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccg 199  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16975747 tcatgaaaatgcagactaaaaccccgccacttaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccg 16975648  T
Q  200 ccactaaggcaaactcata 218  Q
    |||||||||||||| ||||    
T  16975647 ccactaaggcaaacgcata 16975629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7336373 - 7336509
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336373 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 7336472  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7336473 tcatgaaaatgcaaactaaaacccgccactaaggcac 7336509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 43277729 - 43277858
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| |||| || || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  43277729 aatataattgcaattcgcgtcattaaggtatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgtcatgtatgatcat 43277828  T
Q  105 gaaaatgcagactaaaacccgccactaaggcaca 138  Q
    ||||||    ||||||||||||||||||| ||||    
T  43277829 gaaaat----actaaaacccgccactaagacaca 43277858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 11937566 - 11937735
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 156  Q
    ||||||||  |||||||||||| |||||||||| | ||||||||||| || |||| | |||||| ||  ||||| |||||||| ||||||||||||| ||    
T  11937566 cccgccacacaggcaccacacaaatgcatatgctaatgcatgatcataaacaatgaaaactaaatccaaccacttaggcacaacaatgcaatatgatatt 11937665  T
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||  ||||| ||||||    
T  11937666 atcccgccactaaggcaccacacagaaatatattatgaacctgccactaaggcaaatgcatagtcaaata 11937735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 16975616 - 16975534
Alignment:
Q  195 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  16975616 acccgccactaaggcaaactcataggcaaatatagtcacatattaacacatcatcatccacatgaaccaaactgaaatatttt 16975534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 9104640 - 9104522
Alignment:
Q  69 aggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccact 167  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||| |||||||| || |||||||||| ||  || |||||     
T  9104640 aggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcacgccacttaggcacaacaaagcaatatgatatttacctgccaca 9104541  T
Q  168 aaggcaccaccaagaaata 186  Q
    ||||||||||  |||||||    
T  9104540 aaggcaccacacagaaata 9104522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 11937744 - 11937822
Alignment:
Q  199 gccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||| ||||||  |||| ||| |||  |||||||| ||||||||||||||| |||||| | |||||||||    
T  11937744 gccactaaggcaacctcataagcaaacacaatcatgtattaacacatcatcatccacatgaaccaaaataaaatatttt 11937822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 43277702 - 43277744
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattc 59  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  43277702 attcctgccactaaggcatccacacagaatataattgcaattc 43277744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 17542393 - 17542444
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||||| ||||||    
T  17542393 cccgccacacaggcaccacacagatacatatgcgatgcatgatcacgaaaat 17542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 17542446 - 17542508
Alignment:
Q  141 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccact 204  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| || ||||||||||||    
T  17542446 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccact 17542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 8731269 - 8731156
Alignment:
Q  65 actaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgc 163  Q
    |||||||||||||| |||||  ||||| | |||||||||||||||||| ||||||||  || ||||| |  ||  | || ||||||||||  || |||||    
T  8731269 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 8731170  T
Q  164 cactaaggcaccac 177  Q
    | ||||||||||||    
T  8731169 ccctaaggcaccac 8731156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 9083156 - 9083043
Alignment:
Q  65 actaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgc 163  Q
    |||||||||||||| |||||  ||||| | |||||||||||||||||| ||||||||  || ||||| |  ||  | || ||||||||||  || |||||    
T  9083156 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 9083057  T
Q  164 cactaaggcaccac 177  Q
    | ||||||||||||    
T  9083056 ccctaaggcaccac 9083043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 10751239 - 10751515
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10751239 cagaaatataattgcaattcctgccactaaggcatccacagagaatataattgtaattcccgccactaaggcaccacacagatgcatatgccatgcatga 10751338  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  10751339 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaaccagc 10751438  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10751439 cactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatatttt 10751515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 34636714 - 34636451
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  34636714 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacga 34636615  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||||    
T  34636614 acatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatcc-------------ccacaaagaaatatattattaacccgc 34636528  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34636527 cactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatatttt 34636451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 23260293 - 23260489
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260293 cagaaatataattgcaattcccgccactaaggcatccacacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 23260392  T
Q  101 tcatgaaaatgcagactaaaa-cccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaac 196  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| || |||||||||||||||    
T  23260393 tcatgaaaatgcagactaaaaccccgtcacttaggcacaataatgcaacatgatgttatcctgccactaaggcaccacaaaaaaatatattattaac 23260489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 32449954 - 32450122
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 157  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  32449954 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaatcccgccacttaggcacaacaatgcaatatgatgtta 32450053  T
Q  158 tcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  32450054 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 32450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 26182412 - 26182522
Alignment:
Q  93 atgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattat 192  Q
    ||||||||||||||||||| |||||||| || |||||   ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  26182412 atgcatgatcatgaaaatgaagactaaatcctgccacagtggcacaacaatgcaatatgatattatcccgccactaaggcacgaccaagaaatatattat 26182511  T
Q  193 taacccgccac 203  Q
    |||||||||||    
T  26182512 taacccgccac 26182522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 32450134 - 32450209
Alignment:
Q  202 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||    
T  32450134 actaagacaaactcataggcaaatacagtcagatattaacacatcatcatgcacatgaaccaaaatgaaatatttt 32450209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 13773121 - 13773172
Alignment:
Q  60 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  13773121 ccgccacacaggcaccacacagatgtatatgctatgcatgatcatgaaaatg 13773172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 23260483 - 23260525
Alignment:
Q  235 tattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  23260483 tattaacacatcatcatccacatgaaccaaactgaaatatttt 23260525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 20555709 - 20555629
Alignment:
Q  94 tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcac 174  Q
    |||||||| |||| |||| | |||||| ||| ||||  || ||||| ||||||||||||| ||||||||||||||| ||||    
T  20555709 tgcatgataatgataatgaaaactaaatcccaccacatagacacaacaatgcaatatgatattatcccgccactaaagcac 20555629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 24163395 - 24163327
Alignment:
Q  64 cactaaggcaccacacagatgcatatgc-catgcatgatcatg-aaaatgcagactaaaacccgccact 130  Q
    ||||||| |||||||||||| |||||||  |||||| |||||| |||||| |||||||| |||||||||    
T  24163395 cactaagacaccacacagatacatatgctaatgcataatcatgaaaaatgaagactaaatcccgccact 24163327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 37666857 - 37667133
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37666857 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgacatgcatga 37666956  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  37666957 tcatgaaaatgcagactaaaatccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgt 37667056  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  37667057 cactaaggcaaactcatagacaaatacagtcagattttaacacatcatcatccacatggaccaaactgaaatatttt 37667133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43407046 - 43407182
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43407046 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 43407145  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43407146 tcatgaaaatgcaaactaaaacccgccactaaggcac 43407182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 338635 - 338499
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  338635 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatga 338536  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  338535 tcatgaaaatgcaaactaaaacccgccactaaggcac 338499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 8422089 - 8421953
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||  | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  8422089 cagaaatataatcacaattcccgccactaaggcatccacacagaatataattgcaatttccgccactaaggcaccacatagatgcatatgccatgcatga 8421990  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||||||||||||||||| |||||||||    
T  8421989 tcatgaaaatgcagactaaaacccgccgctaaggcac 8421953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 35761741 - 35761909
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 157  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||||||| ||| ||||  |||||||| |||||||| |||||| ||||||||||    
T  35761741 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaattccgccacttaggcacaacaatgcagtatgatgtta 35761840  T
Q  158 tcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  35761841 tcctgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 35761909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 9537070 - 9537206
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgc----aattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||| |||||||||||||||||||| | | |||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||||    
T  9537070 aatataattgcaattcccgccactaaggcatctatatagaatataattgcttgcaattcccgccactaaggcaccacacaaatgcatatgccatgcatga 9537169  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9537170 tcatgaaaatgtagactaaaacccgccactaaggcac 9537206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 33007334 - 33007450
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||    
T  33007334 aatataattgcaattcccgccactaagacatccacacataatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgattat 33007433  T
Q  105 gaaaatgcagactaaaa 121  Q
    ||||||| |||||||||    
T  33007434 gaaaatgtagactaaaa 33007450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 19198451 - 19198622
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatga---tg 154  Q
    ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||| ||| ||||  |||||||| ||| |||| ||||||||||||   ||    
T  19198451 cccgccacacaggcaccacacagatgcatatgttaatgcatgatcataaaaatgaagattaaattccgccacttaggtacaacaatgcaatatgatgatg 19198550  T
Q  155 ttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||  ||||| ||||||    
T  19198551 ttatcccgccactaaggcaccacaaagaaatatattattaacccgtcattaaggcaaatgcatagtcaaata 19198622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 16075252 - 16075097
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 116  Q
    |||||||||||||||||||||||  | |||||||||| ||  |||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |    
T  16075252 attcccgccactaaggcatccacccaaaatataattgtaac-cccgccactaagacaccacacagatgcatttgccatgcatgatcatgaaaatgcatcc 16075154  T
Q  117 taaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggca 173  Q
    |||| ||||||||| |||||| | || | |||||||| ||| ||||||| |||||||    
T  16075153 taaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 35761918 - 35761996
Alignment:
Q  199 gccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||    
T  35761918 gccactaaggcaaactcataggcaaatacagtcaaatattaacacatcatcatccacatgaaccaaaatgaaatatttt 35761996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 25921992 - 25921879
Alignment:
Q  22 cgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaa 121  Q
    ||||||||||||| ||||| | |||||||||| ||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | || |||     
T  25921992 cgccactaaggca-ccacacaaaatataattgtaat-cccaccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaaatgtaaacaaaat 25921895  T
Q  122 cccgccactaaggcac 137  Q
    |||| |||| ||||||    
T  25921894 cccgtcacttaggcac 25921879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9537030 - 9537099
Alignment:
Q  4 aaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 73  Q
    |||||||| ||| |||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  9537030 aaatataactgcaattcccaccactaaggcatctatatagaatataattgcaattcccgccactaaggca 9537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 33007307 - 33007360
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaag 70  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  33007307 attcccgccactaagacatccacacataatataattgcaattcccgccactaag 33007360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 6836445 - 6836394
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  6836445 cccgccacacaggcaccacacagatgcatatgccatgcatgatcaggaaaat 6836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 18472635 - 18472677
Alignment:
Q  69 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  18472635 aggcaccacacagatgcatatgctatgcatgatcatgaaaatg 18472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 9537004 - 9537060
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 73  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||| |||||||||||    
T  9537004 attcccgccgctaaggcatccacacaaaatataactgcaattcccaccactaaggca 9537060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 28561885 - 28561815
Alignment:
Q  62 gccactaaggcaccacacaga--tgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccact 130  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| | | |||| |||||||||    
T  28561885 gccactaaggcaccacacagaaatgcatatatcatgcatgatcatgaaaatgaaaattaaatcccgccact 28561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 6836310 - 6836253
Alignment:
Q  120 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 177  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  6836310 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccac 6836253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 16075150 - 16075096
Alignment:
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    ||||||||||| ||||||||| ||| |||||  ||||||||||||| ||||||||    
T  16075150 atcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggcaa 16075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 537347 - 537084
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  537347 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacga 537248  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 200  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||||    
T  537247 acatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatcc-------------ccacaaagaaatatattattaacccgc 537161  T
Q  201 cactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  537160 cactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatatttt 537084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 277
Target Start/End: Original strand, 4557694 - 4557916
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 156  Q
    ||||||||  |||||||||| |||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| ||    
T  4557694 cccgccacacaggcaccacagagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatatt 4557793  T
Q  157 atcccgccactaaggcaccaccaagaaatatattatta--acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatcca 254  Q
    ||| |||||||||||||||||  |||||||||||||||  ||||||||||||||||| ||||||  |||| ||| |||| ||||||||||||||||||||    
T  4557794 atcgcgccactaaggcaccacacagaaatatattattaatacccgccactaaggcaacctcataagcaaacacaatcaggtattaacatatcatcatcca 4557893  T
Q  255 catggaccaaactgaaatatttt 277  Q
    |||| |||||| |||||||||||    
T  4557894 catgaaccaaaatgaaatatttt 4557916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 40691402 - 40691266
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  40691402 cagaaatataattgtaattcccgccactaaggcatccacacagaatataattgcaatttccgccaataaggcaccacacagatgcatatgccttgcatga 40691303  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||||||||||||||| |||||||||||    
T  40691302 tcatgaaaatgcagactaaaacccgtcactaaggcac 40691266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 30910309 - 30910117
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 116  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  30910309 attcccgacactaaggcatccacacagaatataattgcaattcccgctactaagagaccacacagatgcatatgccatgcatgatcatggaaatgcagac 30910210  T
Q  117 taaaacccgccactaaggcacaata-atgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    | ||| ||||||||||||||| | | ||  ||||| ||  || ||||||||| ||||||||| |||||||||  |||||||  |||||||||||||    
T  30910209 t-aaatccgccactaaggcaccacacat--aatataattataacccgccacttaggcaccactaagaaatatgatattaacttgccactaaggcaa 30910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 38001503 - 38001301
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||||||||| || ||||||||||||||||||| |||||  ||||||    
T  38001503 aatataattgcaattcccgccactaatgcatccacacaagatataattgcaattcccgccact-agacaccacacagatgcatatgtcatgc--gatcat 38001407  T
Q  105 gaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccact 204  Q
    ||||||||||| ||||||||||||||||| ||| | |  | ||||| ||  || | ||||||||| |||||||   || ||||| |||||||||||||||    
T  38001406 gaaaatgcagattaaaacccgccactaagacaccacacag-aatataattataactcgccactaaagcaccacacggatatataatattaacccgccact 38001308  T
Q  205 aaggcaa 211  Q
    |||||||    
T  38001307 aaggcaa 38001301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 25101617 - 25101669
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  25101617 cccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaatg 25101669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 25160710 - 25160762
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  25160710 cccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaatg 25160762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38001530 - 38001478
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaa 69  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||||||||    
T  38001530 attcccaccaccaaggcatccacacagaatataattgcaattcccgccactaa 38001478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 6309237 - 6309186
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  6309237 cccgccacacagacaccacacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 6309184 - 6309116
Alignment:
Q  141 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 210  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| || ||||||||||||||||||    
T  6309184 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccactaaggca 6309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 27026905 - 27026847
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcacca 76  Q
    ||||| |||||||||||||||||| |||||||||||  || |||||||||||||||||||    
T  27026905 attcctgccactaaggcatccacacagaatataattataa-tcccgccactaaggcacca 27026847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 42861869 - 42861832
Alignment:
Q  74 ccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42861869 ccacacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 6309166 - 6309107
Alignment:
Q  20 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 82  Q
    ||||||||||||||| ||||| |||||||||| | ||  ||||||||||||||||||||||||    
T  6309166 cccgccactaaggca-ccacacagaatataatagtaa--cccgccactaaggcaccacacaga 6309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 25101724 - 25101773
Alignment:
Q  159 cccgccactaaggcaccaccaagaaatatattattaacccgccactaagg 208  Q
    ||||||||||||||| ||||||||| ||||   |||||||||||||||||    
T  25101724 cccgccactaaggcaacaccaagaattataagtttaacccgccactaagg 25101773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 25160817 - 25160866
Alignment:
Q  159 cccgccactaaggcaccaccaagaaatatattattaacccgccactaagg 208  Q
    ||||||||||||||| ||||||||| ||||   |||||||||||||||||    
T  25160817 cccgccactaaggcaacaccaagaattataagtttaacccgccactaagg 25160866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 15873656 - 15873917
Alignment:
Q  3 gaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatc 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |    
T  15873656 gaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaac 15873755  T
Q  103 atgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcca 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||||||    
T  15873756 atgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatcc-------------ccacaaagaaatatattattaacccgcca 15873842  T
Q  203 ctaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15873843 cgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatatttt 15873917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10288470 - 10288606
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288470 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 10288569  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10288570 tcatgaaaatgcaaactaaaacccgccactaaggcac 10288606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 40106333 - 40106201
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40106333 aatataattgcaattcctgccactaaggcatccacacagaatataattgcgattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 40106234  T
Q  105 gaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||||||| |||||||||||||||    
T  40106233 gaaaatgcagactaaaatccgccactaaggcac 40106201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 22078135 - 22077977
Alignment:
Q  69 aggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccact 167  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  22078135 aggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccact 22078036  T
Q  168 aaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    |||||||||| |||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  22078035 aaggcaccacaaagagatatattattaacccgccactaaggcaaatgcatagtcaaata 22077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 11036031 - 11036210
Alignment:
Q  7 tataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgc-catgcatgatcatg 105  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  11036031 tataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacagagatgcatatgctaatgcatgatcatg 11036130  T
Q  106 aaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaata 186  Q
    |||||| |||||||| ||||||||| |||||||| ||||||||||||| ||  | |||||| ||||||||||  |||||||    
T  11036131 aaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatatttactcgccac-aaggcaccacacagaaata 11036210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 12911388 - 12911581
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 116  Q
    |||||||| |||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  12911388 attcccgctactaagacatccacacagaatataattgcaattcctaccactaaggcaccacacagatgcatatgccatacatgattatgaaaatgcagac 12911487  T
Q  117 taaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    |||||||||||||||||| || | |  | ||||| ||  || ||||||||| ||||||||| |||||||||  |||||||| | |||||||||||    
T  12911488 taaaacccgccactaaggtaccacacag-aatataattataacccgccacttaggcaccactaagaaatatgatattaacctgtcactaaggcaa 12911581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 12196391 - 12196511
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 116  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  12196391 attcccgtcactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgaatatgccatgtatgatcatgaaaatgcagac 12196490  T
Q  117 taaaacccgccactaaggcac 137  Q
    ||||  |||||||||||||||    
T  12196491 taaagtccgccactaaggcac 12196511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 21491194 - 21491353
Alignment:
Q  69 aggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccac 166  Q
    ||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| || |||||||||    
T  21491194 aggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatattctcccgccac 21491293  T
Q  167 taaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||  ||||| ||||||    
T  21491294 taaggcaccacacagaaatatattattaacccaccactaaggcaaatgcatagtcaaata 21491353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 49170023 - 49170114
Alignment:
Q  44 aatataattgcaattcccg-ccactaaggca-ccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 133  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49170023 aatataattgcaattcccggccactaaggcatccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaag 49170114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 18367030 - 18367173
Alignment:
Q  71 gcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccacta 168  Q
    |||||||||| || ||||||| | ||| |||||||||| |||| ||| |||| || |||||| ||| |||| ||||||||||||| |||||| |||||||    
T  18367030 gcaccacacaaatacatatgctaatgcgtgatcatgaacaatgaagattaaatccagccacttagggacaacaatgcaatatgatattatcctgccacta 18367129  T
Q  169 aggcaccaccaagaaatatattattaacccgccactaaggcaaa 212  Q
    |||||||||  |||||| ||||||||||||||| ||||| ||||    
T  18367130 aggcaccacacagaaatctattattaacccgcccctaagacaaa 18367173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 21491358 - 21491440
Alignment:
Q  195 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||| ||||||  |||| ||| | ||||||||||| ||||||||||||||| |||||| |||||||||||    
T  21491358 acccgccactaaggcaacctcataagcaaacacaataagatattaacacatcatcatccacatgaaccaaaatgaaatatttt 21491440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 40106360 - 40106294
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacaga 82  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  40106360 attcccgccactaaggcttccacacagaatataattgcaattcctgccactaaggcatccacacaga 40106294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 18367192 - 18367274
Alignment:
Q  195 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||| ||||||  |||| ||| |||| |||||||| ||||||||||| ||| |||||| |||||||||||    
T  18367192 acccgccactaaggcaacctcataaccaaacacaatcaggtattaacacatcatcatccatatgaaccaaaatgaaatatttt 18367274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 9993712 - 9993633
Alignment:
Q  107 aaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaata 186  Q
    ||||||| |||||| ||||||||| |||||||| ||||||||||||| ||  ||| |||| ||||||||||  |||||||    
T  9993712 aaatgcaaactaaatcccgccacttaggcacaacaatgcaatatgatatttacccaccacaaaggcaccacacagaaata 9993633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 48653534 - 48653586
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    ||||||||  || |||||||||||||||||||  |||||||||||||||||||    
T  48653534 cccgccacacagacaccacacagatgcatatgttatgcatgatcatgaaaatg 48653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 12196497 - 12196548
Alignment:
Q  160 ccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    ||||||||||||||||||  ||| ||||| ||||||||| ||||||||||||    
T  12196497 ccgccactaaggcaccacacagatatataatattaacccaccactaaggcaa 12196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 9993822 - 9993756
Alignment:
Q  69 aggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggc 135  Q
    |||||||||| |  ||||||||||||||||||| |||| |||| | |||||| ||||||||| ||||    
T  9993822 aggcaccacaaacgtgcatatgccatgcatgataatgataatgaaaactaaatcccgccacttaggc 9993756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 48653595 - 48653648
Alignment:
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 210  Q
    ||||||||||| ||||||||| ||||| ||||   |||||||||||||||||||    
T  48653595 atcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 48653648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 9281 - 9119
Alignment:
Q  115 actaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9281 actaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaact 9182  T
Q  215 catagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  9181 catagacaaatacagtcagatattaacacatcatcatccacatggaccaatctgaaatatttt 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 40459478 - 40459293
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  40459478 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatga 40459379  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatat 187  Q
    |||||||||||||  ||||||||||||||||||||||||  ||  ||||| ||  || ||||||||| ||||||||| |||||||||    
T  40459378 tcatgaaaatgcaacctaaaacccgccactaaggcacaa-catagaatataattataacccgccacttaggcaccactaagaaatat 40459293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 55162676 - 55162545
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55162676 aatataattgcaattcccgccactaaggca-ccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 55162578  T
Q  105 gaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||||||| ||| ||| |||||||    
T  55162577 gaaaatgcagactaaaatccgtcaccaaggcac 55162545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 49499572 - 49499403
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 156  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| |     
T  49499572 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaaaaatgcaatatgatatc 49499473  T
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 226  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||| ||||||    
T  49499472 atcccgccactaaggcaccacacagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 49499403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28968918 - 28969059
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcat-----atgccatg 95  Q
    |||||||||||||||  |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  28968918 cagaaatataattgcatttcccgccaccaagacatccacacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgccatg 28969017  T
Q  96 catgatcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    |||||||||||||||||||| |||||||  ||||||||||||    
T  28969018 catgatcatgaaaatgcagattaaaacctaccactaaggcac 28969059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 13653058 - 13652932
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| ||| ||||||||||| ||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13653058 aatataattgcaatttccgccactaagacattcacacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcat 13652959  T
Q  105 gaaaatgc-agactaaaacccgccact 130  Q
    |||||||| ||||||||||||||||||    
T  13652958 gaaaatgcaagactaaaacccgccact 13652932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 13661183 - 13661057
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| ||| ||||||||||| ||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13661183 aatataattgcaatttccgccactaagacattcacacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcat 13661084  T
Q  105 gaaaatgc-agactaaaacccgccact 130  Q
    |||||||| ||||||||||||||||||    
T  13661083 gaaaatgcaagactaaaacccgccact 13661057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55162719 - 55162638
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 82  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55162719 cagaaatataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacaga 55162638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 2761801 - 2761849
Alignment:
Q  63 ccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2761801 ccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaaatg 2761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 69833 - 69782
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  69833 cccgccacacaggcaccacacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 49499398 - 49499316
Alignment:
Q  195 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatatttt 277  Q
    ||||||||||||||||| ||||||  |||| ||| | || |||||||| ||||||||||||||| |||||| |||||||||||    
T  49499398 acccgccactaaggcaacctcataagcaaacacaattaggtattaacacatcatcatccacatgaaccaaaatgaaatatttt 49499316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 69692 - 69635
Alignment:
Q  120 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 177  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  69692 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccac 69635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 69780 - 69712
Alignment:
Q  141 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 210  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| |  ||||||||||||||||||    
T  69780 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatcgtaacccgccactaaggca 69712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 69762 - 69703
Alignment:
Q  20 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 82  Q
    ||||||||||||||| ||||| |||||||||| | ||  ||||||||||||||||||||||||    
T  69762 cccgccactaaggca-ccacacagaatataatcgtaa--cccgccactaaggcaccacacaga 69703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 13653074 - 13653032
Alignment:
Q  28 taaggcatccacagagaatataattgcaattcccgccactaag 70  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  13653074 taaggaatccacacagaatataattgcaatttccgccactaag 13653032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 13661199 - 13661157
Alignment:
Q  28 taaggcatccacagagaatataattgcaattcccgccactaag 70  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  13661199 taaggaatccacacagaatataattgcaatttccgccactaag 13661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 40448008 - 40447872
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  40448008 cagaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatga 40447909  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  40447908 tcatgaaaatgcaaactaaaacccgccactaaggcac 40447872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40729106 - 40729242
Alignment:
Q  1 cagaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatga 100  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  40729106 cagaaatataattgcaattcccgccactaaggcatccacgcagaatataattgcaatttccaccactaaggcaccacacagatgcatatgccatgcatga 40729205  T
Q  101 tcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  40729206 tcatgaaaatgcagactaaaacccgccactaaggcac 40729242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 18292396 - 18292582
Alignment:
Q  24 ccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18292396 ccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 18292495  T
Q  124 cgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    |||||||||||||| |  |   ||||| ||  || ||||||||||||||||| |  ||| ||||| ||||||||| ||||||||||||    
T  18292496 cgccactaaggcacca-cacaaaatataattataacccgccactaaggcaccccacagatatataatattaacccaccactaaggcaa 18292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 41339936 - 41340068
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41339936 aatataattgcaatttccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaggtgcatatgccatgcatggtcat 41340035  T
Q  105 gaaaatgcagactaaaacccgccactaaggcac 137  Q
    ||||||| |||||||||||||||||||||||||    
T  41340036 gaaaatgaagactaaaacccgccactaaggcac 41340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 28266807 - 28266964
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacagatgcatatgccatgcatgatcatgaaaatgcaga 115  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||||||||||| || ||||| ||||||||||||||||||||||||| |||||| |||    
T  28266807 attcccgccactaagacatccacatagaatataattgtaat-cccgccactaagacatccacatagatgcatatgccatgcatgatcattaaaatgaaga 28266905  T
Q  116 ctaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcac 174  Q
    ||||| ||||||||  |||||||| ||||||||||||| |||| |||||||||||||||    
T  28266906 ctaaatcccgccacacaggcacaacaatgcaatatgatattatgccgccactaaggcac 28266964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 34397514 - 34397632
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 116  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  34397514 attcccgccactaagacatccacacagaatataattgcaatttctgccactaaggcaccacacagatgcatataccatgcatgatcatg--aatgcagac 34397611  T
Q  117 taaaacccgccactaaggcac 137  Q
    |||||||||||||||||||||    
T  34397612 taaaacccgccactaaggcac 34397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 12774137 - 12774244
Alignment:
Q  67 taaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccac 166  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |   | || ||||||||| |||||| | || |  ||||||| ||||||||||||    
T  12774137 taaggcaccacacagatgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgatattatcccgccac 12774236  T
Q  167 taaggcac 174  Q
    ||||||||    
T  12774237 taaggcac 12774244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 41339912 - 41339965
Alignment:
Q  20 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 73  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  41339912 cccgccactaaggcatccgcaaagaatataattgcaatttccgccactaaggca 41339965  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 44789053 - 44789002
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  44789053 cccgccacacaggcaccacacagatgcatatgccttgcatgatcatgaaaat 44789002  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 35670502 - 35670541
Alignment:
Q  72 caccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35670502 caccacacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 29271078 - 29270994
Alignment:
Q  93 atgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 177  Q
    ||||||||||||||||||| | | |||| |||| |||| ||||||   || |||||||||| ||| ||| |||||||||||||||    
T  29271078 atgcatgatcatgaaaatgaaaattaaatcccgtcacttaggcaccccaaagcaatatgatattaacccaccactaaggcaccac 29270994  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 36731989 - 36732043
Alignment:
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 211  Q
    ||||||||||| ||||| ||| |||||||||  |||||||||||| |||||||||    
T  36731989 atcccgccacttaggcatcactaagaaatatgatattaacccgcccctaaggcaa 36732043  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 12774190 - 12774243
Alignment:
Q  157 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 210  Q
    ||||||||||| ||||||||| |||| ||||  ||||| |||||||||||||||    
T  12774190 atcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggca 12774243  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 36731900 - 36731961
Alignment:
Q  69 aggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccact 130  Q
    ||||| |||||| |||||||||||||||||||| |||| |||  | |||||| |||||||||    
T  36731900 aggcagcacacaaatgcatatgccatgcatgataatgataataaaaactaaatcccgccact 36731961  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 44788982 - 44788925
Alignment:
Q  20 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacaca 80  Q
    ||||||||||||||| ||||| |||||||||||| ||  ||| ||||||||||||||||||    
T  44788982 cccgccactaaggca-ccacacagaatataattgtaa--ccctccactaaggcaccacaca 44788925  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 44789000 - 44788932
Alignment:
Q  141 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 210  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| |  |||||| |||||||||||    
T  44789000 aatgcaatatgatattagcccgccactaaggcaccacacag-aatataattgtaaccctccactaaggca 44788932  T

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Target: scaffold1838 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 709 - 577
Alignment:
Q  5 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 104  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||| | |||||||||    
T  709 aatataattgcaattcccgccactaaggcatccacacagactataattgcaattcccaccactaaggcatcacacaaatgcatatgcctttcatgatcat 610  T
Q  105 gaaaatgcagactaaaacccgccactaaggcac 137  Q
    |||||||||||||||||| ||||||||||||||    
T  609 gaaaatgcagactaaaactcgccactaaggcac 577  T

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Target: scaffold1838; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 736 - 670
Alignment:
Q  17 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacaga 82  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  736 attcccgccactaaggcatccgcacagaatataattgcaattcccgccactaaggcatccacacaga 670  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 41958124 - 41958236
Alignment:
Q  24 ccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 123  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958124 ccactaaagcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 41958223  T
Q  124 cgccactaaggca 136  Q
    |  ||||||||||    
T  41958224 catcactaaggca 41958236  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 44436592 - 44436513
Alignment:
Q  58 tcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcac 137  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||    
T  44436592 tcccgccacacaggcaccacacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcac 44436513  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 40841215 - 40841322
Alignment:
Q  60 ccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttat 158  Q
    |||||||  ||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| ||  |||||||| ||||||||||||| ||      
T  40841215 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgcaacataggcacaacaatgcaatatgatattta 40841314  T
Q  159 cccgccac 166  Q
    ||||||||    
T  40841315 cccgccac 40841322  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 22635730 - 22635772
Alignment:
Q  69 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22635730 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 22635772  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 22816023 - 22816064
Alignment:
Q  69 aggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  22816023 aggcaccgcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 3189139 - 3189179
Alignment:
Q  71 gcaccacacagatgcatatgccatgcatgatcatgaaaatg 111  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  3189139 gcaccacacaaatgcatatgtcatgcatgatcatgaaaatg 3189179  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 3189234 - 3189288
Alignment:
Q  159 cccgccactaaggcaccaccaagaaatata---ttattaacccgccactaaggca 210  Q
    ||||||||||||||||||||||||| ||||   ||| | ||||||||||||||||    
T  3189234 cccgccactaaggcaccaccaagaattataagtttaattacccgccactaaggca 3189288  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 32991 - 33078
Alignment:
Q  20 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaa 109  Q
    ||||||||  ||||||||||| |||||||||||   |  |||| |||  |||||||||||||||||||||| |||||||||| |||||||    
T  32991 cccgccacacaggcatccacacagaatataattatga--cccgtcacacaggcaccacacagatgcatatgtcatgcatgataatgaaaa 33078  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 242732 - 242783
Alignment:
Q  59 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 110  Q
    ||||||||  |||||||||||| |||||||||| ||||| ||||||||||||    
T  242732 cccgccacacaggcaccacacatatgcatatgctatgcaagatcatgaaaat 242783  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 242878 - 242935
Alignment:
Q  120 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 177  Q
    |||| ||||||||||||||| ||||||||||||| ||  |||| ||| ||||||||||    
T  242878 aacctgccactaaggcacaacaatgcaatatgatatttacccgtcacaaaggcaccac 242935  T

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