View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4024_high_2 (Length: 542)

Name: NF4024_high_2
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4024_high_2
NF4024_high_2
[»] chr6 (1 HSPs)
chr6 (11-524)||(31273581-31274095)
[»] chr1 (5 HSPs)
chr1 (14-494)||(26215085-26215554)
chr1 (28-389)||(37737098-37737459)
chr1 (27-191)||(9802095-9802259)
chr1 (136-198)||(49639396-49639458)
chr1 (28-61)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (11-494)||(23373624-23374106)
chr3 (40-263)||(19428244-19428467)
chr3 (136-198)||(53979841-53979903)
[»] chr2 (3 HSPs)
chr2 (111-443)||(4939057-4939389)
chr2 (111-443)||(5024147-5024479)
chr2 (28-389)||(23682280-23682641)
[»] chr7 (4 HSPs)
chr7 (13-389)||(3004963-3005339)
chr7 (76-179)||(19813037-19813140)
chr7 (118-191)||(18477788-18477861)
chr7 (139-237)||(18480003-18480101)
[»] scaffold0164 (1 HSPs)
scaffold0164 (136-198)||(25469-25531)
[»] chr8 (4 HSPs)
chr8 (142-200)||(18550969-18551027)
chr8 (334-476)||(44230591-44230733)
chr8 (136-197)||(15194824-15194885)
chr8 (139-239)||(19873107-19873207)
[»] chr5 (2 HSPs)
chr5 (373-452)||(15450297-15450376)
chr5 (325-398)||(26465343-26465416)
[»] chr4 (1 HSPs)
chr4 (136-197)||(18255691-18255752)


Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 31274095 - 31273581
Alignment:
Q  11 cagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  31274095 cagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatg 31273996  T
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 210  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273995 atgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 31273896  T
Q  211 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273895 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 31273796  T
Q  311 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||    
T  31273795 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttggagtgagcaacttgcaaacccagaaagtacttgagttgtcc 31273696  T
Q  411 taaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataat---atctatatagaccaaa 507  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||  |||||||||||||||||||||||   ||||| ||||||||||    
T  31273695 taaatctttaattttgaaagaagcacgcaggacggatttgatgttgttaaactcag--aatgaatttcctgctaaaataatatcatctacatagaccaaa 31273598  T
Q  508 atgacagtgaatgtagt 524  Q
    ||||  |||||||||||    
T  31273597 atgatggtgaatgtagt 31273581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 26215554 - 26215085
Alignment:
Q  14 agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg 113  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  26215554 agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg 26215455  T
Q  114 aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcctt 213  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  26215454 aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcatt 26215355  T
Q  214 ctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctg 313  Q
    ||||||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||    
T  26215354 ctgtaaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcagaaggagtggaaacagatttagagtgagtgagacctg 26215255  T
Q  314 aatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaa 413  Q
    ||| ||||||||||||||||           ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26215254 aattagcaagaagatctaga-----------ctgacaaagtgagatactttgtttagagtgagcaacttccaaacccagaaagtacttgagttgtcctaa 26215166  T
Q  414 atctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataatatc 494  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26215165 atctttaattttgaaagaagtatgcaggatgaatttgatgttgttaaactcagataatgaattgcctgctaaaataatatc 26215085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 37737098 - 37737459
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 127  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  128 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 227  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 37737297  T
Q  228 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 327  Q
    ||||   || || ||||||||||||  ||| ||||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  37737298 atcttcataaggaggactggaatcattatgcagtttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 37737397  T
Q  328 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 389  Q
    || |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  37737398 tccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 37737459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  27 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 126  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  127 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 191  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaacctt 61  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 23373624 - 23374106
Alignment:
Q  11 cagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaat 109  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||    
T  23373624 cagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaat 23373723  T
Q  110 gatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaag 209  Q
    | |||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  23373724 ggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaactag 23373823  T
Q  210 ccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgaga 309  Q
    ||||||||||||| | ||  | |||||| |||||||||||||| |||||||||| | |||||  ||| |||||||||||  |||||||||||||||||||    
T  23373824 ccttctgtaagcaaagatgaccgtgtat-gtggactggaatcatgatgaagttttatagaagtatcaaaaggagtggaagcaggtttagagtgagtgaga 23373922  T
Q  310 cctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatc 409  Q
    ||| |||||||||||| ||||||||||||||||| || ||||||||||||||| ||||   | ||||||||||| ||||||  ||| || ||||| |  |    
T  23373923 cctaaatcagcaagaatatctagacaatattttcccttacaaagtgagataccctgttgataatgagcaacttctaaaccctaaaaatatttgagct-gc 23374021  T
Q  410 ctaaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataatatc 494  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  23374022 ctaaatcctttattttgaaagaagcatgcaggatggatttgatgttgttgaactcagataatgaatttcatgcttgaataatatc 23374106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
Q  40 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 139  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  140 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg 239  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || |||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg 19428268  T
Q  240 tggactggaatcacgatgaagttt 263  Q
     |||||||||||| ||||||||||    
T  19428267 gggactggaatcatgatgaagttt 19428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 443
Target Start/End: Original strand, 4939057 - 4939389
Alignment:
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 210  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 4939156  T
Q  211 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 310  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  4939157 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 4939256  T
Q  311 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 410  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  4939257 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 4939356  T
Q  411 taaatctttaattttgaaagaagcatgcaagat 443  Q
    || |||||| |||||||| ||||||||||||||    
T  4939357 tagatctttgattttgaaggaagcatgcaagat 4939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 443
Target Start/End: Original strand, 5024147 - 5024479
Alignment:
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 210  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 5024246  T
Q  211 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 310  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  5024247 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 5024346  T
Q  311 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 410  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  5024347 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 5024446  T
Q  411 taaatctttaattttgaaagaagcatgcaagat 443  Q
    || |||||| |||||||| ||||||||||||||    
T  5024447 tagatctttgattttgaaggaagcatgcaagat 5024479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 389
Target Start/End: Complemental strand, 23682641 - 23682280
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 127  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  128 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 227  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 23682442  T
Q  228 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 327  Q
    ||||   ||  | ||||||||||||  ||| | ||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  23682441 atcttcataaagaggactggaatcattatgcaatttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 23682342  T
Q  328 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 389  Q
    || |||||||| ||||| ||||| | ||| |||||||||||  | |||||||| || |||||    
T  23682341 tccagacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaacc 23682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 3005339 - 3004963
Alignment:
Q  13 gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat 112  Q
    ||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||    
T  3005339 gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat 3005240  T
Q  113 gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcct 212  Q
    | | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  ||    
T  3005239 gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatct 3005140  T
Q  213 tctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacct 312  Q
     || |||| ||| ||||||   ||  | ||||||||||||  ||| ||||| | |||| | || ||||||||||| |  |||||||| |     ||||||    
T  3005139 cctataagaagaaatatcttcataaagaggactggaatcattatgcagtttgatagaacgatctgaaggagtggatactggtttagaattgacaagacct 3005040  T
Q  313 gaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 389  Q
    ||||||||||| | ||| |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  3005039 gaatcagcaagcaaatccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 3004963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  76 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 175  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  176 ttgt 179  Q
    ||||    
T  19813137 ttgt 19813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  118 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 191  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
Q  139 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat 237  Q
    |||||||||||||||||||  || ||||| || ||||| ||||  || | |||||| || || |||||||| |||||||||||||  ||||||||||||    
T  18480003 tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat 18480101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  142 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 476
Target Start/End: Complemental strand, 44230733 - 44230591
Alignment:
Q  334 caatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaag 433  Q
    ||||||||||| ||||| |  ||||| ||||| ||  | ||||||||||| | ||| ||||  ||||| | || ||| |||||||| || ||||||||||    
T  44230733 caatattttctttgacataaagagatgccttgcttagaatgagcaacttcaagacctagaacatacttcaattgtcccaaatctttgatcttgaaagaag 44230634  T
Q  434 catgcaagatggatttgatgttgttaaactcagataatgaatt 476  Q
     |||||  |||||||||||||  | ||||||||||||||||||    
T  44230633 aatgcagaatggatttgatgtgttgaaactcagataatgaatt 44230591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 197  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
Q  139 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg 238  Q
    |||||||||||||||||||  || ||||| |  ||||| ||||  || | |||||| || || |||||||| |||||||||||||  |||||||||||||    
T  19873207 tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg 19873108  T
Q  239 g 239  Q
    |    
T  19873107 g 19873107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 15450376 - 15450297
Alignment:
Q  373 tgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaagcatgcaagatggatttgat 452  Q
    |||||||| || | ||| || ||||| |||||||  |||||||||||||| ||||| |||||||||| ||||||||||||    
T  15450376 tgagcaacctcaataccaaggaagtatttgagttggcctaaatctttaatcttgaaggaagcatgcaggatggatttgat 15450297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 26465343 - 26465416
Alignment:
Q  325 agatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagta 398  Q
    ||||| |||||||||||||| || ||||| ||||| ||||||  | | ||||||||||| ||||| ||||||||    
T  26465343 agatcaagacaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagta 26465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 197  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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