View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4024_low_1 (Length: 553)
Name: NF4024_low_1
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4024_low_1 |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 514
Target Start/End: Original strand, 23179949 - 23180454
Alignment:
| Q |
9 |
ggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179949 |
ggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattgg |
23180048 |
T |
|
| Q |
109 |
aaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180049 |
aaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctg |
23180148 |
T |
|
| Q |
209 |
tcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacaccattccacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180149 |
tcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacaccattccacat |
23180248 |
T |
|
| Q |
309 |
tgatatgtgcttggtacttcattagcaacgtagggttatatggtacaatatgtttgttattgagtgaaacaccattcttgacaattgtgttaccattgtc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23180249 |
tgatatgtgcttggtacttcattagcaacgtagggttatatggtacaatatgtttgttattgagtgaaacaccgttcttgacaattgtgttaccattgtc |
23180348 |
T |
|
| Q |
409 |
tcttcgtctatacactggataaccttctttgtcaacaattgttgagttctgatacgtcttagggtagtattttgtgcattttccatctttcatgcaaggt |
508 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23180349 |
tcttcgtctgtacaccggataaccttctttgtcaacaattgttgagttctgatacttcttagggtagtactttgtgcattttccatctttcatgcaaggt |
23180448 |
T |
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| Q |
509 |
gatgat |
514 |
Q |
| |
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|||||| |
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| T |
23180449 |
gatgat |
23180454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 116392 - 116511
Alignment:
| Q |
64 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
163 |
Q |
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||||||||||| | ||| || |||||||| | |||||| |||||||| || || |||||||||| |||||||| ||| || | |||||||||||| || |
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| T |
116392 |
atgaaagaacatacgttcgaccgctggctttctaccatgaattggaaaagagaacattctccaacttgcttcacttggagaaatatacctacaatctaaa |
116491 |
T |
|
| Q |
164 |
tattgtttgatctcatcaat |
183 |
Q |
| |
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||||| |||||||||||||| |
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| T |
116492 |
tattgcttgatctcatcaat |
116511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 116562 - 116646
Alignment:
| Q |
243 |
cataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacaccattccacattgatatgtgcttggtactt |
327 |
Q |
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|||||||||||| || | |||||||||||| || || |||| || || | ||||||| |||| ||||||||| ||||||||||| |
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| T |
116562 |
cataacctttatggatatacttgaataagtatttgattgatgtacgttggttacaccactccatattgatatgagcttggtactt |
116646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 151506 - 151624
Alignment:
| Q |
62 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
161 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
151506 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
151605 |
T |
|
| Q |
162 |
agtattgtttgatctcatc |
180 |
Q |
| |
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|||||||||||| ||||| |
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| T |
151606 |
ggtattgtttgatttcatc |
151624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 18060486 - 18060604
Alignment:
| Q |
62 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
161 |
Q |
| |
|
||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
18060486 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
18060585 |
T |
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| Q |
162 |
agtattgtttgatctcatc |
180 |
Q |
| |
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|||||||||||| ||||| |
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| T |
18060586 |
ggtattgtttgatttcatc |
18060604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 22065434 - 22065490
Alignment:
| Q |
97 |
accatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacct |
153 |
Q |
| |
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|||||| |||||||||||||| |||||||||| |||||||| ||| || |||||||| |
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| T |
22065434 |
accatgaattggaaatgaaaacattctccaacttgcttcacttggagaaacatacct |
22065490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 22072342 - 22072406
Alignment:
| Q |
118 |
aattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaa |
182 |
Q |
| |
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||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| || ||||||| |
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| T |
22072342 |
aattctccaacatgcctcacttggtgatatatacctacaatccaagtattgttttatttcatcaa |
22072406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 124877 - 124995
Alignment:
| Q |
64 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
163 |
Q |
| |
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||||||||||| | ||||| ||||| || ||||||||||| | || ||||| |||||||||||||| |||| |||||| ||||| ||||||| || | |
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| T |
124877 |
atgaaagaacatgcgctcaacagctggtttacgaccatgtatggagaaagaaaatattctccaacatgcctcacttggtgaaacatatctacaataaatg |
124976 |
T |
|
| Q |
164 |
tattgtttgatctcatcaa |
182 |
Q |
| |
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|| |||||||| ||||||| |
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| T |
124977 |
tactgtttgatttcatcaa |
124995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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