View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4024_low_11 (Length: 228)

Name: NF4024_low_11
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4024_low_11
NF4024_low_11
[»] chr7 (2 HSPs)
chr7 (7-219)||(22835144-22835356)
chr7 (5-219)||(22886610-22886824)
[»] chr1 (2 HSPs)
chr1 (32-164)||(35877111-35877242)
chr1 (1-69)||(897241-897309)
[»] chr5 (1 HSPs)
chr5 (40-163)||(4524031-4524154)
[»] chr4 (1 HSPs)
chr4 (1-72)||(52934488-52934559)
[»] scaffold0533 (1 HSPs)
scaffold0533 (6-96)||(3152-3242)
[»] chr3 (1 HSPs)
chr3 (114-164)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (114-159)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 22835144 - 22835356
Alignment:
Q  7 actatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttac 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  22835144 actataaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatatagcaatagatacatacatttcagataaaaattttac 22835243  T
Q  107 tccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatttc 206  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||    
T  22835244 tccaaagacttttcttaagacacgtgatttttgtaaagtgttcttataaaaaaggatgaaggaaatttttttcttcttgcaaaaatcgaggcgaaatttc 22835343  T
Q  207 gagccacaggttc 219  Q
    |||||||| ||||    
T  22835344 gagccacatgttc 22835356  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 22886610 - 22886824
Alignment:
Q  5 atactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaattt 104  Q
    ||||||||||||||||  |||| ||| ||| |||| ||||||| |||| |||| |||||||||||||| || ||  ||| |||||||||| |||    ||    
T  22886610 atactatcaatttatctaagaatatgaaaattaactttgaatgcacttttataaaaagggtaatttagaaatagtaacacacatttcagacaaatttatt 22886709  T
Q  105 actccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatt 204  Q
    |||| |||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| | ||| ||       |||| ||||||||||  || ||||||    
T  22886710 actcgaaagactttttttagtacccgtgatttttgtaaagtgttcttctaaaaaaggatggagggaaaatttttcttcatgcaaaaatcatggtgaaatt 22886809  T
Q  205 tcgagccacaggttc 219  Q
    |||||||||| ||||    
T  22886810 tcgagccacatgttc 22886824  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 35877111 - 35877242
Alignment:
Q  32 aaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaatacacgt 131  Q
    |||||||||||||||||| |||||||||||||||||| ||| || || || | |||||| ||| |||    | ||||||   |||||| |||||||  ||    
T  35877111 aaaataacattgaatgtatttatatacaaagggtaatctagtaatagttatacacattttagacaaatttatcactccagcaacttttattaatacctgt 35877210  T
Q  132 gacttttgtaaagtgttcttataaaaaaggacg 164  Q
     | |||||||||||||||||||||||| |||||    
T  35877211 -atttttgtaaagtgttcttataaaaagggacg 35877242  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 897309 - 897241
Alignment:
Q  1 attaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatt 69  Q
    |||||||||||| ||||||| | ||| ||| ||| ||||||| |||||| |||| ||||||| ||||||    
T  897309 attaatactatctatttatcttggaatatgaaaagtaacattaaatgtatttatgtacaaagagtaatt 897241  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 4524031 - 4524154
Alignment:
Q  40 attgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaatacacgtgacttttg 139  Q
    |||||||| | |||| |||||||| |||||||| || ||  ||| |||||||||| |||    |||||||||  |||||||||||||| ||||  ||||     
T  4524031 attgaatgcatttatctacaaaggataatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttcttaatacccgtgttttttt 4524130  T
Q  140 taaagtgttcttataaaaaaggac 163  Q
    || ||||||||||| |||| ||||    
T  4524131 tagagtgttcttattaaaagggac 4524154  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 52934559 - 52934488
Alignment:
Q  1 attaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttag 72  Q
    |||||||| ||||||| ||| | ||| ||| ||| |||||||||||||| ||||| ||||||| ||||||||    
T  52934559 attaatacaatcaattcatcttggaatatgaaaagtaacattgaatgtatttataaacaaaggataatttag 52934488  T

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Target: scaffold0533 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 3242 - 3152
Alignment:
Q  6 tactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagata 96  Q
    |||||| |||||||| |  || ||| ||||||||||| ||| || ||||| ||||| | |||||||| ||||||  |||||||||||||||    
T  3242 tactattaatttatcttgaaatatgaaaaataacattaaatatatttatacacaaatgataatttagtaacagacgcatacatttcagata 3152  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 29675606 - 29675556
Alignment:
Q  114 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacg 164  Q
    |||||||||||||| ||||| |||||||||||  ||||||||||| |||||    
T  29675606 acttttcttaatactcgtgatttttgtaaagtaatcttataaaaagggacg 29675556  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 35984887 - 35984842
Alignment:
Q  114 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaa 159  Q
    |||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  35984887 acttatcttaatacccgtgatttttgtaaagtgttctaataaaaaa 35984842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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