View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4024_low_3 (Length: 372)
Name: NF4024_low_3
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4024_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 62 - 362
Target Start/End: Complemental strand, 51856581 - 51856281
Alignment:
| Q |
62 |
tttaatcaatctcgtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatg |
161 |
Q |
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| T |
51856581 |
tttaatcgatctagtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatg |
51856482 |
T |
|
| Q |
162 |
ttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagta |
261 |
Q |
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| T |
51856481 |
ttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagta |
51856382 |
T |
|
| Q |
262 |
gcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttannnnnnngctctgtgatgatgt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51856381 |
gcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttatttttttgctctgtgatgatgt |
51856282 |
T |
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| Q |
362 |
c |
362 |
Q |
| |
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| |
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| T |
51856281 |
c |
51856281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 51856653 - 51856591
Alignment:
| Q |
17 |
aataataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
78 |
Q |
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| T |
51856653 |
aataataagacatgattctagtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
51856591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 51856710 - 51856680
Alignment:
| Q |
75 |
gtttgaagggtaacaagccactcttatattg |
105 |
Q |
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| T |
51856710 |
gtttgaagggtaacaagccactcttatattg |
51856680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 75 - 362
Target Start/End: Complemental strand, 8945754 - 8945467
Alignment:
| Q |
75 |
gtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactg |
174 |
Q |
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| T |
8945754 |
gtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattactg |
8945655 |
T |
|
| Q |
175 |
ttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattat |
274 |
Q |
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| T |
8945654 |
ttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattat |
8945555 |
T |
|
| Q |
275 |
acataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttannnnnnngctctgtgatgatgtc |
362 |
Q |
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| T |
8945554 |
acataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttatttttttgctctgtgatgatgtc |
8945467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
128 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggca |
227 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
228 |
ttacagaaaaataaaat |
244 |
Q |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 45480376 - 45480436
Alignment:
| Q |
19 |
taataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
78 |
Q |
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||||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||| |
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| T |
45480376 |
taataagttatgattctagtcaaattggtactgcaacgtgtgactttaatcaatctcgttt |
45480436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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