View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4024_low_5 (Length: 297)
Name: NF4024_low_5
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4024_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 41486044 - 41486312
Alignment:
| Q |
20 |
acgagagcatgaggagttctgagagtaatacaaaaaatatagaagaacctgagat-ttattagaatcatactttgttgtcattgtcggcactctaaacaa |
118 |
Q |
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| T |
41486044 |
acgagagcatgaggagttctgagagtaatacaaaaaatatagaagaacctgagatattattagaatcatactttgttgtcattgtcggcactctaaacaa |
41486143 |
T |
|
| Q |
119 |
gctaacatctgtaaacacacaatgttatcttcatgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttcagtta |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486144 |
gctaacatcggtaaacacacaatgttatcttcatgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttcagtta |
41486243 |
T |
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| Q |
219 |
aaagaataaatcaataacatggaaggttccatcattcagctgacgtcttctgttttccttctttttcat |
287 |
Q |
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| T |
41486244 |
aaagaataaatcaataacatggaagattccatcattcagctggcgtcttctgttttccttctttttcat |
41486312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 41482928 - 41483171
Alignment:
| Q |
18 |
acacgagagcatgaggagttctgagagtaatacaaaaaatatagaagaacctgagat-ttattagaatcatactttgttgtcattg-------tcggcac |
109 |
Q |
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| T |
41482928 |
acacgagatcatgaggagatctgaaagtaaaacagaaaatatagaagaacttgaggtgttgttagaatcatactttgttgtcattggtcattgtcagcac |
41483027 |
T |
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| Q |
110 |
tctaaacaagctaacatctgtaaacacacaatgttatcttcatgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttg |
209 |
Q |
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| T |
41483028 |
tctaaacaagccaacatcggtaaacacacaatgttatctatatgaacccttttctttcaaacttcactgcagtttatctatcacagtttcccttttcttg |
41483127 |
T |
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| Q |
210 |
tttcagttaaaagaataaatcaataacatggaaggttccatcat |
253 |
Q |
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| T |
41483128 |
tttcagttaaaagaataaatcgataacatagaagattccatcat |
41483171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 45384856 - 45384644
Alignment:
| Q |
18 |
acacgagagcatgaggagttctgagagtaatacaaaaaatatagaagaacctgagat-ttattagaatcatactttgttgtcattgtcggcactctaaac |
116 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| || |||||| |||||||||||||||||| | ||||||||||| |
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| T |
45384856 |
acacgagagcatgaggagttctgaaagtaataatgaaaatatagaagaacttgagatgttgttagaagcatactttgttgtcattgacagcactctaaac |
45384757 |
T |
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| Q |
117 |
aagctaacatctgtaaacacac--aatgttatcttc-atgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttc |
213 |
Q |
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| T |
45384756 |
aagttgacatcggtaaacacccgcactgttatcttatattaacccttttctttccaacttcaccgcagtttatctatcaccgtttccattttcttgtttc |
45384657 |
T |
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| Q |
214 |
agttaaaagaata |
226 |
Q |
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||||||||||||| |
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| T |
45384656 |
agttaaaagaata |
45384644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 5671686 - 5671481
Alignment:
| Q |
24 |
gagcatgaggagttctgagagtaatacaaaaaatatagaagaacctgagat-ttattagaatcatactttgttgtcattgtcggcactctaaacaagcta |
122 |
Q |
| |
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|||||||| ||||||||| ||||||| | || ||||| |||||| |||||| || ||||| ||||||||||||||||| | || | ||| |||||| |
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| T |
5671686 |
gagcatgatgagttctgaaagtaatatagaacatatataagaacttgagatgttgttagag-catactttgttgtcattaacatcattttaaccaagctg |
5671588 |
T |
|
| Q |
123 |
acatctgtaa---acacacaatgttatcttcatgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttcagttaa |
219 |
Q |
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|||| |||| ||||||| | ||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||| |
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| T |
5671587 |
gcatcagtaacacacacacattcctatctacattaacacttttctttccaacttcaccgcagtttatctatcatcgtttttcctttcatgtttcagttaa |
5671488 |
T |
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| Q |
220 |
aagaata |
226 |
Q |
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||||||| |
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| T |
5671487 |
aagaata |
5671481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 5681045 - 5680978
Alignment:
| Q |
159 |
ttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttcagttaaaagaata |
226 |
Q |
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|||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
5681045 |
ttttctttccaacttcaccgcagtttatctattatcgtttttcctttcttgtttcagttaaaagaata |
5680978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 5685643 - 5685591
Alignment:
| Q |
141 |
tgttatcttcatgaacccttttctttccaacttcaccgcagtttatctatcac |
193 |
Q |
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|||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5685643 |
tgttatctacattaacccttttctttccaaattcaccgcagtttatctatcac |
5685591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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