View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4024_low_7 (Length: 244)
Name: NF4024_low_7
Description: NF4024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4024_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 40209502 - 40209729
Alignment:
| Q |
1 |
ttgctatctatgcatgtgaatcatgttgatctgtaaaagtaacatttgccttttgaagagtgcacccagtagaagtaacatcggtctttagaaggctgca |
100 |
Q |
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| T |
40209502 |
ttgctatctatgcatgtgaatcatgttgatctgtaaaagtaacatttgtcttttgaagagtgcacccagtagaagtaacatcggtctttagaaggctgca |
40209601 |
T |
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| Q |
101 |
cccaaggcctatctcattacttggtataaagttgttcatattatcaaacaacaaaatattgtccgaagatgattcatttgcttctttctcagattcccat |
200 |
Q |
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| T |
40209602 |
cccaaggcctatctcattacttggtataaagttgttcatattatcaaacaacaaaatattgttcgaagatgattcatttacttctttctcagattcccat |
40209701 |
T |
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| Q |
201 |
agatcacgaagcttttgttgaaactcct |
228 |
Q |
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| T |
40209702 |
agatcacgaagtttttgttgaaactcct |
40209729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 16973227 - 16973094
Alignment:
| Q |
70 |
tagaagtaacatcggtctttagaaggctgcacccaaggcctatctcattacttggtataaagttgttcatattatcaaacaacaaaatattgtccgaaga |
169 |
Q |
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| T |
16973227 |
tagaagtaacatctgtctttagtagagtgcatccaagtcctatctcattgcttggtatacagttgttcatattatcaaacaacaaaatatcatctggaga |
16973128 |
T |
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| Q |
170 |
tgattcatttgcttctttctcagattcccataga |
203 |
Q |
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| T |
16973127 |
tgattcatttgattctttttcagattcccataga |
16973094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 33200594 - 33200517
Alignment:
| Q |
69 |
gtagaagtaacatcggtctttagaaggctgcacccaaggcctatctcattacttggtataaagttgttcatattatca |
146 |
Q |
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| T |
33200594 |
gtagaagtatcatttgtctttagacgaatgcatccaagacctatctcatcgcttggtataaagttgttcattttatca |
33200517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 33200508 - 33200449
Alignment:
| Q |
167 |
agatgattcatttgcttctttctcagattcccatagatcacgaagcttttgttgaaactc |
226 |
Q |
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| T |
33200508 |
agatgattcattttcttctttctcagattcatatagattgagaagcttttgtggaaactc |
33200449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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