View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_high_10 (Length: 321)
Name: NF4025_high_10
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 1104675 - 1104918
Alignment:
| Q |
18 |
atcggtttgaaacaagtttcatcagttcaacaagatctttatgttcgaatggatgcttccacagtaggtaaatgtgttatggttctttaatgtttattta |
117 |
Q |
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| T |
1104675 |
atcggtttgaaacaagtttcatcagttcaacaagatctttatgttcgaatggatgcttccacagtaggtaaatgtgttatggttctttaatgtttattta |
1104774 |
T |
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| Q |
118 |
ttt-ggttatatttgtgtctgtttttgctaatccctacataaatatttaggctgccaacaaattttcatagaattaattcatatgacatctttgaaaata |
216 |
Q |
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| T |
1104775 |
tttaggttatatttgtgtctgtttttcctaatccctacataaatatttaggctgccaacaaattttcatagaattaattcatatgacatctttgaaataa |
1104874 |
T |
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| Q |
217 |
tgtttttcatccgaataaataatctaaattactttcattatttt |
260 |
Q |
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| T |
1104875 |
tgtttttcatccgaataaataatctaaattactttcattatttt |
1104918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 1088128 - 1088195
Alignment:
| Q |
24 |
ttgaaacaagtttcatcagttcaacaagatctttatgttcgaatggatgcttccacagtaggtaaatg |
91 |
Q |
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| T |
1088128 |
ttgaaacagatttcatcattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatg |
1088195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 1047675 - 1047721
Alignment:
| Q |
45 |
caacaagatctttatgttcgaatggatgcttccacagtaggtaaatg |
91 |
Q |
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| T |
1047675 |
caacaatatctatatattcgaatggatgcttccacagtaggtaaatg |
1047721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 1072485 - 1072531
Alignment:
| Q |
45 |
caacaagatctttatgttcgaatggatgcttccacagtaggtaaatg |
91 |
Q |
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|||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
1072485 |
caacaatatctatatattcgaatggatgcttccacagtaggtaaatg |
1072531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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