View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4025_high_14 (Length: 239)

Name: NF4025_high_14
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4025_high_14
NF4025_high_14
[»] chr2 (3 HSPs)
chr2 (18-239)||(4473583-4473809)
chr2 (143-210)||(41287932-41287999)
chr2 (147-207)||(31840271-31840331)
[»] chr8 (2 HSPs)
chr8 (145-226)||(38587840-38587921)
chr8 (149-207)||(35387744-35387802)
[»] chr7 (3 HSPs)
chr7 (143-226)||(39999038-39999121)
chr7 (164-226)||(32136101-32136163)
chr7 (143-192)||(21256836-21256885)
[»] chr1 (1 HSPs)
chr1 (141-226)||(7054644-7054728)
[»] chr4 (2 HSPs)
chr4 (146-215)||(33266594-33266663)
chr4 (145-226)||(30333161-30333242)
[»] chr3 (1 HSPs)
chr3 (142-197)||(10866906-10866961)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 4473809 - 4473583
Alignment:
Q  18 ggtatatcaatatacctattcgaggaatgtggttatcaatttaaaagccataaccnnnnnnnattgcaaaactaat-----aaaaaaggttatgcgccta 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||| ||||     ||||||||||||||| |||    
T  4473809 ggtatatcaatatacatattcgaggaatgtggttatcaatttaaaagccataacctttttttattgcaaaaataattaaaaaaaaaaggttatgcggcta 4473710  T
Q  113 ttgtaacatgttttcgtattttaattagtcttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccata 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4473709 ttgtaacatgttttcgtattttaattagtcatagagcatctacaatgctaaaataagatttatgttctttaagcattttgatgggtccatcattgccata 4473610  T
Q  213 tggagattcaagaatagatggggattc 239  Q
    ||| |||||||||| ||||||||||||    
T  4473609 tggggattcaagaacagatggggattc 4473583  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 41287932 - 41287999
Alignment:
Q  143 ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgcca 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41287932 ttagagcatctacactgctaaaacaagatttatgttcttcaagcattttggtgggtccatcattgcca 41287999  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 31840271 - 31840331
Alignment:
Q  147 agcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattg 207  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||  ||| ||||||||||    
T  31840271 agcatctacaatgctagaacaagatttatgtccttcaaacattttagtggatccatcattg 31840331  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 38587921 - 38587840
Alignment:
Q  145 agagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccatatggagattcaagaa 226  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||    
T  38587921 agagcatctacaatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgccacttggggattcaagaa 38587840  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 35387744 - 35387802
Alignment:
Q  149 catctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattg 207  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||    
T  35387744 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccatcattg 35387802  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 39999121 - 39999038
Alignment:
Q  143 ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccatatggagattcaagaa 226  Q
    |||||||||||||||||||| |||||||||| | |||||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  39999121 ttagagcatctacaatgctagaacaagatttgtattcttcaagcattttggtgggttcatcattaccacatggagattcaagaa 39999038  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 32136163 - 32136101
Alignment:
Q  164 aacaagatttatgttcttcaagcattttgatgggtccatcattgccatatggagattcaagaa 226  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||  ||||||||||    
T  32136163 aacaaaatttatgttcttcaagcattttggtgggtccaccattgtcatatgaggattcaagaa 32136101  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 21256836 - 21256885
Alignment:
Q  143 ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttg 192  Q
    ||||||||||| |||||||||||  | |||||||||||| ||||||||||    
T  21256836 ttagagcatctccaatgctaaaatcatatttatgttcttgaagcattttg 21256885  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 7054728 - 7054644
Alignment:
Q  141 tcttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccatatggagattcaagaa 226  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| || | ||||||||||||||||| |||  ||||||||||    
T  7054728 tcttagagcatctacaatgctagaacaagatttgtgttcttcaagca-ttgggtgggtccatcattgccacatgtggattcaagaa 7054644  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 33266663 - 33266594
Alignment:
Q  146 gagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccatatgg 215  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||| |||||||||||||| |||||||    
T  33266663 gagcatctacaaagctagaacaaaatttatgtttttcaagcattttggtgggtccatcattgtcatatgg 33266594  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 30333242 - 30333161
Alignment:
Q  145 agagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgccatatggagattcaagaa 226  Q
    |||||||||| ||||||| || ||   ||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||    
T  30333242 agagcatctaaaatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgccacatgaggattcaagaa 30333161  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 10866961 - 10866906
Alignment:
Q  142 cttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatggg 197  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||    
T  10866961 cttagagcatctacaatgctagaacaatatttatgttcttgaagcattttggtggg 10866906  T

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