View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4025_high_18 (Length: 230)

Name: NF4025_high_18
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4025_high_18
NF4025_high_18
[»] chr1 (17 HSPs)
chr1 (1-213)||(13244261-13244473)
chr1 (1-211)||(13271826-13272036)
chr1 (1-211)||(13086347-13086557)
chr1 (67-187)||(12963677-12963797)
chr1 (1-209)||(19278912-19279120)
chr1 (53-175)||(13007489-13007611)
chr1 (1-187)||(13080631-13080817)
chr1 (53-158)||(13204748-13204853)
chr1 (71-175)||(30367889-30367993)
chr1 (53-175)||(13069957-13070079)
chr1 (53-175)||(13101289-13101411)
chr1 (68-213)||(13064956-13065101)
chr1 (54-175)||(19727443-19727564)
chr1 (57-172)||(13161814-13161929)
chr1 (58-172)||(13130122-13130236)
chr1 (57-172)||(13094692-13094807)
chr1 (77-175)||(13214132-13214230)
[»] chr6 (1 HSPs)
chr6 (52-175)||(31396456-31396580)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 13244473 - 13244261
Alignment:
Q  1 catgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244473 catgaaggtaaacaagcttatcaatcttttccacgtttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 13244374  T
Q  101 cgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtct 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244373 cgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtct 13244274  T
Q  201 ctgatatacttct 213  Q
    |||||||||||||    
T  13244273 ctgatatacttct 13244261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13271826 - 13272036
Alignment:
Q  1 catgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 100  Q
    ||||||||||||  ||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  13271826 catgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttt 13271925  T
Q  101 cgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtct 200  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| | |  |||||||||    
T  13271926 tgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagagtgaatgcagtgtct 13272025  T
Q  201 ctgatatactt 211  Q
    || ||||||||    
T  13272026 ctaatatactt 13272036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13086347 - 13086557
Alignment:
Q  1 catgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 100  Q
    |||||||||| || || |||| || |||||| ||  ||||||||  || |||||| ||||| |||| ||||||||||||||| ||||||||||| |||||    
T  13086347 catgaaggtacactagtttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattatttt 13086446  T
Q  101 cgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtct 200  Q
     |||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| | |||||||| |  |||||||||    
T  13086447 agcttccactatgaaatgagttgaaacaagccaagagaaccaacttagacctgaactaactgttccacttcctgcagctaagagattgaatgcagtgtct 13086546  T
Q  201 ctgatatactt 211  Q
    || ||||||||    
T  13086547 ctaatatactt 13086557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 12963797 - 12963677
Alignment:
Q  67 ttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttcc 166  Q
    ||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12963797 ttagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcc 12963698  T
Q  167 atttcctgcaccgaagagatt 187  Q
    | |||||||| | ||||||||    
T  12963697 acttcctgcagctaagagatt 12963677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 19279120 - 19278912
Alignment:
Q  1 catgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 100  Q
    ||||||| ||||| |||||||||| || || |||  | |||||   ||||||||| ||||||| ||||| ||| ||| | ||||||||||||||||||||    
T  19279120 catgaagataaactagcttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttt 19279021  T
Q  101 cgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtct 200  Q
     ||||| ||||||||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||| |||||| | |||||||| |  |||||||||    
T  19279020 tgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtct 19278921  T
Q  201 ctgatatac 209  Q
    || ||||||    
T  19278920 ctaatatac 19278912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 13007489 - 13007611
Alignment:
Q  53 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 152  Q
    |||||||||||||||  | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13007489 attctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13007588  T
Q  153 gaactaattgttccatttcctgc 175  Q
    ||||||||||| |||||||||||    
T  13007589 gaactaattgtgccatttcctgc 13007611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 13080817 - 13080631
Alignment:
Q  1 catgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataatttt 100  Q
    ||||||||||||| |||||||||| || ||||||   ||||||| |||| |||||||| || ||| ||| ||||||||||||||||||||||||||||||    
T  13080817 catgaaggtaaactagcttatcaagctcttccacacctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataatttt 13080718  T
Q  101 cgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatt 187  Q
      | || ||  ||||||| |||||||| |||||||| |||||| | ||||||| |||||||||||||||||||||| | ||||||||    
T  13080717 accatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttccatttcctgcaaccaagagatt 13080631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 13204748 - 13204853
Alignment:
Q  53 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 152  Q
    |||||||||||||||  |||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13204748 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacct 13204847  T
Q  153 gaacta 158  Q
    ||||||    
T  13204848 gaacta 13204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 30367993 - 30367889
Alignment:
Q  71 acaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccattt 170  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||| |||||     
T  30367993 acaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccatta 30367894  T
Q  171 cctgc 175  Q
    |||||    
T  30367893 cctgc 30367889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 13070079 - 13069957
Alignment:
Q  53 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 152  Q
    |||||||||||||||  | || |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13070079 attctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13069980  T
Q  153 gaactaattgttccatttcctgc 175  Q
    ||| ||| ||| |||||||||||    
T  13069979 gaagtaactgtgccatttcctgc 13069957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 13101289 - 13101411
Alignment:
Q  53 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 152  Q
    |||||||||||||||  |||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||| ||| ||    
T  13101289 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagct 13101388  T
Q  153 gaactaattgttccatttcctgc 175  Q
    ||||||| ||  |||||||||||    
T  13101389 gaactaactgggccatttcctgc 13101411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 13065101 - 13064956
Alignment:
Q  68 tagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttcca 167  Q
    ||||||||||||||| |||||||||||||| || |||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||| ||| ||     
T  13065101 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccg 13065002  T
Q  168 tttcctgcaccgaagagatttaccgcagtgtctctgatatacttct 213  Q
    ||||| ||    || ||||| || ||||||||||| | ||||||||    
T  13065001 tttcccgctaacaatagattgactgcagtgtctctaagatacttct 13064956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 19727443 - 19727564
Alignment:
Q  54 ttctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctg 153  Q
    ||||||||||||||  | || ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||    
T  19727443 ttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctg 19727542  T
Q  154 aactaattgttccatttcctgc 175  Q
     ||||| ||  |||||||||||    
T  19727543 tactaactgggccatttcctgc 19727564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 13161814 - 13161929
Alignment:
Q  57 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 156  Q
    |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||  ||||| || |||||||| ||| ||||||    
T  13161814 tcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaac 13161913  T
Q  157 taattgttccatttcc 172  Q
    ||||||  ||||||||    
T  13161914 taattgaaccatttcc 13161929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 13130122 - 13130236
Alignment:
Q  58 cctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaact 157  Q
    ||||||||||||  ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| |||||| || |||||||| ||| |||||||    
T  13130122 cctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaact 13130221  T
Q  158 aattgttccatttcc 172  Q
    |||||  ||||||||    
T  13130222 aattgaaccatttcc 13130236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 13094692 - 13094807
Alignment:
Q  57 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 156  Q
    |||||| ||||||  ||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13094692 tcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 13094791  T
Q  157 taattgttccatttcc 172  Q
    ||||||| ||||||||    
T  13094792 taattgtaccatttcc 13094807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 13214132 - 13214230
Alignment:
Q  77 atctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgc 175  Q
    |||||| || |||||||||||||| |||||||||||| ||||||||||||||||||| || |||||| | |||||||||| || ||  |||||||||||    
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgc 13214230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 31396580 - 31396456
Alignment:
Q  52 aattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttg-aaacaagccaaaagaaccaacttagac 150  Q
    ||||||| | ||| ||| |||| |||||||  ||||||||||||||||| ||||||||| |||||||||||| |||||||||| || |||||||  ||||    
T  31396580 aattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagac 31396481  T
Q  151 ctgaactaattgttccatttcctgc 175  Q
     |||||||||||| |||||||||||    
T  31396480 ttgaactaattgtgccatttcctgc 31396456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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