View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4025_high_4 (Length: 595)

Name: NF4025_high_4
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4025_high_4
NF4025_high_4
[»] chr6 (4 HSPs)
chr6 (17-68)||(28699339-28699390)
chr6 (23-55)||(34925139-34925171)
chr6 (336-410)||(26210747-26210821)
chr6 (23-56)||(34929503-34929536)
[»] chr8 (2 HSPs)
chr8 (353-409)||(27505696-27505752)
chr8 (336-410)||(29802714-29802788)
[»] chr3 (3 HSPs)
chr3 (336-386)||(9281470-9281520)
chr3 (353-410)||(22755517-22755574)
chr3 (353-391)||(28389278-28389316)
[»] chr5 (1 HSPs)
chr5 (342-422)||(34278746-34278827)
[»] chr4 (2 HSPs)
chr4 (353-410)||(20651426-20651483)
chr4 (336-364)||(19525946-19525974)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 28699339 - 28699390
Alignment:
Q  17 atcttggtcttgttattctgtactatttcctatataactatttgaatgtgtt 68  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28699339 atcttggtcttgttattctgtactatttcctatatagctatttgaatgtgtt 28699390  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34925171 - 34925139
Alignment:
Q  23 gtcttgttattctgtactatttcctatataact 55  Q
    |||||||||||||||||||||||||||||||||    
T  34925171 gtcttgttattctgtactatttcctatataact 34925139  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 26210747 - 26210821
Alignment:
Q  336 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 410  Q
    ||||||||  ||||||||||||||||||||||| |||||   || | ||| ||||| || |||||||||||||||    
T  26210747 actccctctttcctatattaaatgacctaatttaaaaatacatattgttcgtataacatgatttgaccttatttt 26210821  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 34929536 - 34929503
Alignment:
Q  23 gtcttgttattctgtactatttcctatataacta 56  Q
    ||||||||||||||||||||||||||||| ||||    
T  34929536 gtcttgttattctgtactatttcctatatgacta 34929503  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 27505696 - 27505752
Alignment:
Q  353 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttattt 409  Q
    |||||||||||||||| |||| ||||||||||||||||| ||  |||||||||||||    
T  27505696 ttaaatgacctaatttaaaaaagtgtactattcatataacatgctttgaccttattt 27505752  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 29802788 - 29802714
Alignment:
Q  336 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 410  Q
    ||||||||| ||| || ||| |||||||||||| |||||||||| ||||||||||| ||  ||||||| ||||||    
T  29802788 actccctccatcccattttatatgacctaatttgaaaatgtgtattattcatataatatgttttgaccatatttt 29802714  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 9281520 - 9281470
Alignment:
Q  336 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattca 386  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||||||    
T  9281520 actccctccgtcccattttaaatgacctaatttgaaaatgtctactattca 9281470  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 22755517 - 22755574
Alignment:
Q  353 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 410  Q
    ||||||||||||||||||||||||| |||||||| |||| ||  ||||||| ||||||    
T  22755517 ttaaatgacctaatttcaaaatgtgcactattcacataacatgttttgaccatatttt 22755574  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 28389316 - 28389278
Alignment:
Q  353 ttaaatgacctaatttcaaaatgtgtactattcatataa 391  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  28389316 ttaaatgacctactttaaaaatgtgtactattcatataa 28389278  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 34278827 - 34278746
Alignment:
Q  342 tccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgacctta-ttttctactaaaatat 422  Q
    ||||||| || ||| |||||||||||| |||||||||| | ||||||||| ||  |||||||||| ||||||||||| ||||    
T  34278827 tccgtcccattttatatgacctaattttaaaatgtgtattgttcatataacatgttttgaccttatttttctactaatatat 34278746  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 20651426 - 20651483
Alignment:
Q  353 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 410  Q
    |||||||| ||||||| |||||||| ||||||||||||| ||| ||||| | ||||||    
T  20651426 ttaaatgatctaatttaaaaatgtgaactattcatataatatattttgatcatatttt 20651483  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 364
Target Start/End: Complemental strand, 19525974 - 19525946
Alignment:
Q  336 actccctccgtcctatattaaatgaccta 364  Q
    |||||||||||||||||||||||||||||    
T  19525974 actccctccgtcctatattaaatgaccta 19525946  T

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