View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_11 (Length: 299)
Name: NF4025_low_11
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31255015 - 31254732
Alignment:
| Q |
1 |
tcccttctctactcgcctttgataaatttcatctttctcatattacaagacatcaaaaccttaactcttgcttcataacacttttgcaaaaatggctact |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255015 |
tcccttctctactcgcctttgatatatttcatctttctcatattacaagacatcaaaaccttaactcttgcttcataacacttttgcaaaaatggctact |
31254916 |
T |
|
| Q |
101 |
aaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31254915 |
aaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgcac |
31254816 |
T |
|
| Q |
201 |
ttcttttctaatctacattttatgcttcannnnnnnnnnactaatctcattcgtatgcatgatatattgaattcttattgacagt |
285 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31254815 |
ttcttttctaatctacattttatgcttca-tttttttttactaatctcattcgtatgcatgatatattgaattcttattgacagt |
31254732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 31245886 - 31245601
Alignment:
| Q |
3 |
ccttctctactcgcctttgataaatttcatctttctcatattacaagacatcaaaaccttaact-cttgcttc---ataacacttttgcaaaaatggcta |
98 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
31245886 |
ccttctctactcgcctttaataaatttcatcttcctcatactacaccacatcaaaaccttaactgtttggttcataataacacttttgcaaaaatggcta |
31245787 |
T |
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| Q |
99 |
ctaaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgc |
198 |
Q |
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| T |
31245786 |
ctaaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgc |
31245687 |
T |
|
| Q |
199 |
acttcttttctaatctacattttatgcttcannnnnnnnnnactaatctcattcgtatgcatgatatattgaattcttattgacagt |
285 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31245686 |
acttcttttctaatctacattttatgcttca-tttttttttactaatctcattcgtatgcatgatatattgaattcttattgacagt |
31245601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 31236490 - 31236275
Alignment:
| Q |
3 |
ccttctctactcgcctttgataaatttcatctttctcatattacaagacatcaaaaccttaactctt-gcttcataa---cacttttgcaaaaatggcta |
98 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||| | ||||||| |||| ||||||||||||||| |
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| T |
31236490 |
ccttctctactcgcctttaataaatttcatcttcctcatactacaccacatcaaaaccttaactctttggttcataataacactgttgcaaaaatggcta |
31236391 |
T |
|
| Q |
99 |
ctaaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31236390 |
ctaaaagggtttttgatgattctaatgataaagatcaagacaatccaaacgacaaacgaatgagatcatctactagtcgaccttcttttgcttcgtatgc |
31236291 |
T |
|
| Q |
199 |
acttcttttctaatct |
214 |
Q |
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|||||||||||||||| |
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| T |
31236290 |
acttcttttctaatct |
31236275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 31236181 - 31236136
Alignment:
| Q |
240 |
actaatctcattcgtatgcatgatatattgaattcttattgacagt |
285 |
Q |
| |
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|||||||| |||| |||||||| |||||||||||||| |||||||| |
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| T |
31236181 |
actaatcttattcttatgcatgctatattgaattcttcttgacagt |
31236136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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