View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_13 (Length: 289)
Name: NF4025_low_13
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_13 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 43022212 - 43022500
Alignment:
| Q |
1 |
cttcattaacttgtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022212 |
cttcattaacttgtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctgg |
43022311 |
T |
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| Q |
101 |
aaaataaaatcaaacnnnnnnnnnnntcttgacaaaccgatagccaataatagtgcaagtaagatccaaatcatgattgtttcaatcaccttgaacttga |
200 |
Q |
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| T |
43022312 |
aaaataaaatcaaacaaaaaataaaatcttgacaaaccgatagccaataatagtgcaagtaagatccaaatcatgattgtttcaatcaccttgaacttga |
43022411 |
T |
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| Q |
201 |
taagtgctcctcgcattttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcatcttatttggtaaaagatc |
289 |
Q |
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| T |
43022412 |
taagtgctcctcgcattttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcgtcttatttggtaaaagatc |
43022500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 42811832 - 42812121
Alignment:
| Q |
1 |
cttcattaacttgtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctgg |
100 |
Q |
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| T |
42811832 |
cttcattaacttgtgaaacctttggttctcccttggaggttgcagatgaagttggagatggtatcttgggctgtgggcaacgagaagacaacatatctgg |
42811931 |
T |
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| Q |
101 |
aaaataaaatcaaacnnnnnnnnnnn-tcttgacaaaccgatagccaataatagtgcaagtaagatccaaatcatgattgtttcaatcaccttgaacttg |
199 |
Q |
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| T |
42811932 |
aaaataaaatcaaacaaaaaaaagttatcttcacaaaccgatagccaataatagtgcaagtaagatccaaatcatgattgtttcaatcaccttgaacttg |
42812031 |
T |
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| Q |
200 |
ataagtgctcctcgcattttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcatcttatttggtaaaagatc |
289 |
Q |
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| T |
42812032 |
ataagtgctccctgcattttcagtactgctattgccagactccaatatgcgatggatggcatctctaagcgtcttatttggtaaaagatc |
42812121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 35060898 - 35061171
Alignment:
| Q |
21 |
tttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaaaataaaatcaaacnnnnn |
120 |
Q |
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| T |
35060898 |
tttggttctcccttggaggtagcagatgaagttggagatggtatcttgggttgtgggcaacgagaagactccatatctggaaaataaaatcaaaccaaaa |
35060997 |
T |
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| Q |
121 |
nnnnnn-----tcttgacaaaccgatagccaataatagtgcaagtaagatccaaatcatgattgtttcaatcaccttgaacttgataagtgctcctcgca |
215 |
Q |
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| T |
35060998 |
aaaaaaaattatcttgataaacctatagccaataatagtgcaattaagatccaaatcatgattgtttcaatcaccttgaacttgagaagtgctccccgca |
35061097 |
T |
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| Q |
216 |
ttttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcatcttatttggtaaaagatc |
289 |
Q |
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| T |
35061098 |
ttttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcgtcttatttggtataagatc |
35061171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 41565449 - 41565339
Alignment:
| Q |
179 |
gtttcaatcaccttgaacttgataagtgctcctcgcattttcagtactgctattgccagactccaatatgcgattgatggcatctctaagcatcttattt |
278 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||| | ||||||| |
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| T |
41565449 |
gtttcaataaccttgaacttgataagtgctcccagcattttcagtactgctattgcctgactccagtatgcgattgatggtatctcttaatgtcttatta |
41565350 |
T |
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| Q |
279 |
ggtaaaagatc |
289 |
Q |
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| T |
41565349 |
ggtaaaagatc |
41565339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 21827578 - 21827689
Alignment:
| Q |
3 |
tcattaacttgtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaa |
102 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||| |||||| | |||| | ||||| ||||| |||| ||||||||||||||| || |
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| T |
21827578 |
tcattaactagtgaaacctttggttctcccttagaggtagcagataaagttggaaatggcaacttggattgtggacaacatgaagactccatatctacaa |
21827677 |
T |
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| Q |
103 |
aataaaatcaaa |
114 |
Q |
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| T |
21827678 |
aataaaatcaaa |
21827689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 21827691 - 21827737
Alignment:
| Q |
157 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
203 |
Q |
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| T |
21827691 |
aagtaagatccaaatcatgattgtttcaatcaccttaaacttgataa |
21827737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 41565613 - 41565521
Alignment:
| Q |
13 |
gtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaaaat |
105 |
Q |
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| T |
41565613 |
gtgaaatctttagtcctcccttagaggcagcagatgacgttggagatggaatcttaggttgtggacagcgagcagactccatatctgaaaaat |
41565521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 39603322 - 39603433
Alignment:
| Q |
3 |
tcattaacttgtgaaacctttggttctcccttggaggtagcagatgaagttgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaa |
102 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||| || || | |||||| |||||| ||||| ||||| ||| ||||||||||| || |
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| T |
39603322 |
tcattaactagtgaaacctttggttctcccttagaggtagcagataaaagtggaaatggtaacttgggttgtggacaacgtgaaaactccatatctacaa |
39603421 |
T |
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| Q |
103 |
aataaaatcaaa |
114 |
Q |
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|||||||||||| |
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| T |
39603422 |
aataaaatcaaa |
39603433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 39603435 - 39603481
Alignment:
| Q |
157 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
39603435 |
aagtaagatctaaatcatgattgtttcaatcaccttaaacttgataa |
39603481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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