View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_17 (Length: 235)
Name: NF4025_low_17
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 1646951 - 1647123
Alignment:
| Q |
15 |
tcctccatgtcaggtactcttcttttctttgcatgattacctgggtcgtcggtaagtaagtaaagtctgatcaaatatcgttctggtcaggatttgaact |
114 |
Q |
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| T |
1646951 |
tcctccatgtcaggtactcttcttttctttgcatgattacctgg----tcggtaagtaagtaaagtctgatcaaatatcgttctggtcaggatttgaact |
1647046 |
T |
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| Q |
115 |
cgggttttctcgaacaactaatctttgattgaagttcattaatcattgagctcaacacaaatacaatttaaaatcat |
191 |
Q |
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| T |
1647047 |
cgggttttctcgaacaattaatctttgattgaagttcattaatcattgagctcaacacaaatacaatttaaaatcat |
1647123 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 1647146 - 1647185
Alignment:
| Q |
195 |
gctattgtatgtatatgcagaaaacatctttgctagggctc |
235 |
Q |
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| T |
1647146 |
gctattgtatgt-tatgcagaaaacatctttgctagggctc |
1647185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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