View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_19 (Length: 221)
Name: NF4025_low_19
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31255201 - 31254995
Alignment:
| Q |
1 |
acatcattttcaacaacatttttaattttagaccctatatcctattttcttggatatttcctccgacattctaagaagcttcggattattattttatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255201 |
acatcattttcaacaacatttttaattttagaccctatatcctattttcttggatatttcctccgacattctaagaagcttcggattattattttatgca |
31255102 |
T |
|
| Q |
101 |
tgtttaattattttaatatg-tattt-caaaattctaaagtctattccattttttgggctataaataggaaggtcttggacaaccttcccttctctactc |
198 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255101 |
tgtttaattattttaatatgttatttacaaaattctaaagtctattccattttttgggctataaataggaaggtcttggacaaccttcccttctctactc |
31255002 |
T |
|
| Q |
199 |
gcctttg |
205 |
Q |
| |
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||||||| |
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| T |
31255001 |
gcctttg |
31254995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 31246040 - 31245940
Alignment:
| Q |
8 |
tttcaacaacatttttaattttagaccctatatcctattttcttggatatttcctccgacattctaagaagcttcggattattattttatgcatgtttaa |
107 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
31246040 |
tttcaacaacatttttaattttagaccctatatcctattttcttggatatttcctccgacattctaagaagcttcggttta-tactttatgcatgtttaa |
31245942 |
T |
|
| Q |
108 |
tt |
109 |
Q |
| |
|
|| |
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|
| T |
31245941 |
tt |
31245940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31236655 - 31236547
Alignment:
| Q |
1 |
acatcattttcaacaacatttttaattttagaccctatatcctattttcttggatatttcctccgacattctaagaagcttcggattattattttatgca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
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| T |
31236655 |
acatcattttcaacaacatttttaactttaggctctatatcctattttcttggatatttcctccgacattctaagaagcttcggtttattactctatgca |
31236556 |
T |
|
| Q |
101 |
tgtttaatt |
109 |
Q |
| |
|
||||||||| |
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|
| T |
31236555 |
tgtttaatt |
31236547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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