View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_3 (Length: 620)
Name: NF4025_low_3
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 308 - 546
Target Start/End: Complemental strand, 41802105 - 41801856
Alignment:
| Q |
308 |
tttttagagggatgaattaaacgagacaaattgttttagatc-----------tcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
396 |
Q |
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| T |
41802105 |
tttttaaagggataaattaaacgagacaaattgttttagatcagaatataatctcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
41802006 |
T |
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| Q |
397 |
atacactgtaaaattgaaaattgcccgaatcgtatatgcgaaacctcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
496 |
Q |
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| T |
41802005 |
atacactgtaaaattgaaaattgtcctagtcgtatatgcgaagcttcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
41801906 |
T |
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| Q |
497 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgagtttt |
546 |
Q |
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| T |
41801905 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgagtttt |
41801856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 41803396 - 41803246
Alignment:
| Q |
7 |
gaactagtctcgaggattatgtaactagtaacatgcaaagatgaattcgttaaaagggacccaaacaactatggagctttcaatcaaattctaatttatg |
106 |
Q |
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| T |
41803396 |
gaactagtctcgaggattatgtaactagtaacatgcaaagttgaattcgttaaaagggacccaaacaactatggagctttcaatcaaattctaatttatg |
41803297 |
T |
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| Q |
107 |
ttgaagcttccaaatcgaattctaattaatgatgaaggttcctattaaaat |
157 |
Q |
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| T |
41803296 |
ttgaagcttccaaatcgaattctaattaatgatgaaggttcctattaaaat |
41803246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 41802634 - 41802511
Alignment:
| Q |
195 |
attatttctgccacttatatttagtgaaataaattatgttacgtttgacttcaagataaactttttattagtggccgttcttaattgtgttaatttgtaa |
294 |
Q |
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| T |
41802634 |
attatttctgccaccaatatttagtgaaaaaaattatattacgtttgacttcaagataaac-ttttcttagtgatcgttcttaattgtgttaatttataa |
41802536 |
T |
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| Q |
295 |
gcaacttgcacaatttttagaggga |
319 |
Q |
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| T |
41802535 |
gcaacttgcataatttttagaggga |
41802511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 195 - 552
Target Start/End: Original strand, 3382135 - 3382511
Alignment:
| Q |
195 |
attatttctgccacttatatttagtgaaataaattatgttacgtttgacttcaagataaactttttattagtggccgttcttaattgtgttaatttgtaa |
294 |
Q |
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| T |
3382135 |
attatttttgtcacctatatttagtgaaaaaaattatgttatgtttgacttcaatatatactttttcttagtggttgttcttaattgtgttaatttgtga |
3382234 |
T |
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| Q |
295 |
gcaacttgcacaatttttagagggatgaattaaacgagacaaattgttttagatc-----------tcatgtttgggacttcatcttacaatggttttga |
383 |
Q |
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| T |
3382235 |
gcaacttgcacaatatttagagggataaattaaacgagacaaattgttgtagatcagaatatatattcatatttgggacttcatctt--gaaggttttga |
3382332 |
T |
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| Q |
384 |
ttgaaaattctatatacactgtaaaa----------ttgaaaattgcccgaatcgtatatgcgaaacctcatggcttgtgaaagagacaaggaaatttga |
473 |
Q |
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| T |
3382333 |
ttgaaaattctatataaactataaaatgtaaaagattttaaaattgccccaatcgtatatgtgaaacttcatggcttgtgaaagagacagtaaaatatta |
3382432 |
T |
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| Q |
474 |
ttgagggaaacaaacttctaagaggtggtaaaaacacacttcaaactcatgaacactaatttaattgagttttcttttt |
552 |
Q |
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| T |
3382433 |
tcgagggaaacaaactcctgagaggtggtaaaagcacacttcaaactcctgaacgctaatttaattaagtttttttttt |
3382511 |
T |
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