View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4025_low_6 (Length: 419)
Name: NF4025_low_6
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 41451888 - 41452121
Alignment:
| Q |
9 |
catcatcacaagcattagatggaacagccacacgttcacaagaagggcacatagtaagagtagttggtggtgtcatttgcatgtaaaattgtggggaaag |
108 |
Q |
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| T |
41451888 |
catcaacacaagcattagatggaacagccacacgttcacaagaagggcacatagtaagagtagttggtggtgtcatttgcatgtaaaattgtggggaaag |
41451987 |
T |
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| Q |
109 |
tttcagtgctctaagctcttgtacttccttctgtagtctcctattctcctccgttagattttcacagcaccttttcaacacttcacaatcaacctctgtt |
208 |
Q |
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| T |
41451988 |
tttcagtgctctaagctcttgtacttccttctgtagtctcctattctcctccgttagattttcacagcaccttttcaacacttcacaatcaacctctgtt |
41452087 |
T |
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| Q |
209 |
tgcttcagctttgtcctataattatttcaaatca |
242 |
Q |
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| T |
41452088 |
tgcttcagctttgtcctataattatttcaaatca |
41452121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 41452206 - 41452282
Alignment:
| Q |
327 |
cctagctcttctgttttgaaaccagacttctacttgtcttggacgaagaccaagttgctttgcaagggccaactttt |
403 |
Q |
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| T |
41452206 |
cctagctcttctgttttgaaaccagacttctacttgtcttggacgaagaccaagttgctttgcaagtgccaactttt |
41452282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 4059300 - 4059101
Alignment:
| Q |
26 |
gatggaacagccacacgttcacaagaagggcacatagtaagagtagttggtggtgtcatttgcatgtaaaattgtggggaaagtttcagtgctctaagct |
125 |
Q |
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| T |
4059300 |
gatggaacagcgacacgctcacaagaggggcacatggtaagtgttgttggtggtgtcatttgcatgtagaattgtggggaaagtttcaatgctcttaact |
4059201 |
T |
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| Q |
126 |
cttgtacttccttctgtagtctcctattctcctccgttagattttcacagcaccttttcaacacttcacaatcaacctctgtttgcttcagctttgtcct |
225 |
Q |
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| T |
4059200 |
cttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
4059101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 891307 - 891120
Alignment:
| Q |
38 |
acacgttcacaagaagggcacatagtaagagtagttggtggtgtcatttgcatgtaaaattgtggggaaagtttcagtgctctaagctcttgtacttcct |
137 |
Q |
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| T |
891307 |
acacgctcacacgaagggcacattgtgagagtggtgggaggattcatttgcatgtagagttgtggagataacttcaatgccctaagctcttgcacttcct |
891208 |
T |
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| Q |
138 |
tctgtagtctcctattctcctccgttagattttcacagcaccttttcaacacttcacaatcaacctctgtttgcttcagctttgtcct |
225 |
Q |
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| || | ||||||||||| || |||||| | |||||||| || ||||| |||||||| || || |||||||||| ||| ||||| |
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| T |
891207 |
tttgcaacctcctattctcatcagttagagtctcacagcatctcttcaagtactcacaatccacttcagtttgcttcaacttggtcct |
891120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 25901532 - 25901573
Alignment:
| Q |
38 |
acacgttcacaagaagggcacatagtaagagtagttggtggt |
79 |
Q |
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| T |
25901532 |
acacgttcacaagaagggcacatagttaaagtagttgctggt |
25901573 |
T |
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