View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4025_low_9 (Length: 321)
Name: NF4025_low_9
Description: NF4025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4025_low_9 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 43022872 - 43022569
Alignment:
| Q |
18 |
atccaagcgttcagttggtgatctaccacctgagctccactgccctttgtgcaataatgtcatgaaagatgctgtactgtcaagcaagtgttgttttaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43022872 |
atccaagcgttcagttggtgatctaccacctgagctccactgccctttgtgcaataatgtcatgaaagatgctgtactgtcaagcaagtgttgttttaaa |
43022773 |
T |
|
| Q |
118 |
agcttctgtgacaaatgtaagtttttatgctactgtaaaaaatatttcgcaatttgagtaatatactggcgtgtcgttaaagttcctctttttcattatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43022772 |
agcttctgtgacaaatgtaagtttttatgctactgtaaaaaatatttcgcaatttgagtaatatactggcgtgtctttaaagttcctctttttcattatg |
43022673 |
T |
|
| Q |
218 |
caagtattgaacatcttagatgttttgcttctcggcaacttttccttgaactatatattgtatataatttttattttatattgaatcattcgtaaaaatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43022672 |
caagtattgaacatcttagatgttttgcttctcggcaacttttccttgaactatatattgtatataatttttattttatattgaatcattcgtaaaaatc |
43022573 |
T |
|
| Q |
318 |
tatt |
321 |
Q |
| |
|
|||| |
|
|
| T |
43022572 |
tatt |
43022569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 42812487 - 42812193
Alignment:
| Q |
25 |
cgttcagttggtgatctaccacctgagctccactgccctttgtgcaataatgtcatgaaagatgctgtactgtcaagcaagtgttgttttaaaagcttct |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
42812487 |
cgttcagttggtgatctaccacctgagctccactgccccttgtgcaataatgtcatgaaagatgctgtattgacaagcaagtgttgttttaaaagcttct |
42812388 |
T |
|
| Q |
125 |
gtgacaaatgtaagtttttatgctactgtaaaaaatatttcgcaatttgagtaatatactggcgtgtcgttaaagttcctctttttcattatgcaagtat |
224 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
42812387 |
gtgacaaatgtaagtttttatgcttctataataaatatttcagaatttgagtattatactagcgtgtctttaaagttcctctttttcattatgcaagttt |
42812288 |
T |
|
| Q |
225 |
tgaacatcttagatgttttgcttctcggcaacttttccttgaactatatattgtata-taatttttattttatattgaatcattcgtaaaaatct |
318 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
42812287 |
tgaacattttacatgttttgcttctcggtaacttttttccgaactatatattgtatattaatttttattttatactgaatcatttttaaaaatct |
42812193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 35061536 - 35061243
Alignment:
| Q |
25 |
cgttcagttggtgatctaccacctgagctccactgccctttgtgcaataatgtcatgaaagatgctgtactgtcaagcaagtgttgttttaaaagcttct |
124 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
35061536 |
cgttcagttcgtgatctaccacctgagctccactgccccgtgtgcaataatgtcatgaaagatgctgtattgacaagcaagtgttgttttaaaagcttct |
35061437 |
T |
|
| Q |
125 |
gtgacaaatgtaagtttttatgctactgtaaaaaatatttcgcaatttgagtaatatactggcgtgtcgttaaagttcctctttttcattatgcaagtat |
224 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| ||||||||| |||||||||| |||||| || ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
35061436 |
gtgataaatgtaagtttttatgcttctataataaatatttcagaatttgagtattatactagc--gtctttaaagtttatctttttcattatgcaagtat |
35061339 |
T |
|
| Q |
225 |
tgaacatcttagatgttttgcttctcggcaacttttccttgaac--tatatattgtatataatttttattttatattgaatcattcgtaaaaatct |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35061338 |
tgaacattttagatgttttgcttctcggcaactttttcccgaactatatatattgtatataatttttattttatactgaatcatttttaaaaatct |
35061243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 41564977 - 41565088
Alignment:
| Q |
37 |
gatctaccacctgagctccactgccctttgtgcaataatgtcatgaaagatgctgtactgtcaagcaagtgttgttttaaaagcttctgtgacaaatgta |
136 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||| || |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
41564977 |
gatctgccacctgagctccactgccccttgtgcagtaatgttatgaaagatgctgtgttgacaagcaagtgctgttttaaaagtttctgtgacaaatgta |
41565076 |
T |
|
| Q |
137 |
agtttttatgct |
148 |
Q |
| |
|
|| |||||||| |
|
|
| T |
41565077 |
tgtatttatgct |
41565088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University