View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4026_high_2 (Length: 619)

Name: NF4026_high_2
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4026_high_2
NF4026_high_2
[»] chr6 (20 HSPs)
chr6 (11-603)||(11169878-11170470)
chr6 (11-603)||(11208700-11209292)
chr6 (21-580)||(11275272-11275831)
chr6 (270-555)||(11196305-11196575)
chr6 (457-555)||(11315049-11315147)
chr6 (430-555)||(11155997-11156122)
chr6 (430-555)||(11160864-11160989)
chr6 (430-555)||(11199440-11199565)
chr6 (430-555)||(11241739-11241864)
chr6 (428-500)||(11132719-11132791)
chr6 (270-401)||(11160719-11160850)
chr6 (339-401)||(11155921-11155983)
chr6 (339-401)||(11199364-11199426)
chr6 (82-154)||(11196117-11196189)
chr6 (349-401)||(11315188-11315240)
chr6 (270-401)||(11241878-11242009)
chr6 (287-335)||(11319818-11319866)
chr6 (109-158)||(11155697-11155746)
chr6 (346-405)||(11132652-11132711)
chr6 (105-165)||(11132411-11132471)
[»] scaffold1207 (1 HSPs)
scaffold1207 (361-580)||(546-765)


Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 603
Target Start/End: Original strand, 11169878 - 11170470
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169878 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 11169977  T
Q  111 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169978 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 11170077  T
Q  211 gtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170078 gtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt 11170177  T
Q  311 gaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtccc 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  11170178 gaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtccc 11170277  T
Q  411 actacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttc 510  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  11170278 actacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactcttc 11170377  T
Q  511 actatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatc 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  11170378 actatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttactgagattgtcgaaaattccacgactaatc 11170470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 603
Target Start/End: Original strand, 11208700 - 11209292
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| ||||||    
T  11208700 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag 11208799  T
Q  111 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||   ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||    
T  11208800 caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt 11208898  T
Q  210 ggtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11208899 ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatct 11208998  T
Q  310 tgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcc 409  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11208999 tgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtcc 11209098  T
Q  410 cactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttactttt 509  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  11209099 cactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactctt 11209198  T
Q  510 cactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatc 603  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| ||||||   | |||||||||||    
T  11209199 cactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagatcgtcgaactttgcacgactaatc 11209292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 580
Target Start/End: Original strand, 11275272 - 11275831
Alignment:
Q  21 taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg 120  Q
    |||||||||||||| || |||||||||||||||||| || ||  ||||| ||  ||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  11275272 taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg 11275371  T
Q  121 tccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgactt-ttccctattggtaggaatc 219  Q
    ||||||||| ||| ||||||||||||||||| |  ||| | || || |||| ||||   |  || |||||||||| |||| |||| | ||||||||||||    
T  11275372 tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaat-acttcttccttgttggtaggaatc 11275470  T
Q  220 gtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaactttt 319  Q
     |||||||||| |||| ||||    ||||||   ||| ||   | |||||||||| |||||| ||||| || ||||||||||||||||||||||||||||    
T  11275471 atggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt 11275570  T
Q  320 cacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactaccctt 419  Q
    |||||| | |||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||  ||     
T  11275571 cacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctgctatgctc 11275670  T
Q  420 ttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatccca 519  Q
     | |||| |||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   |||||||    
T  11275671 attaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatccca 11275770  T
Q  520 ctatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagat 580  Q
    |||||| ||||||||||||||||| | ||||||||| ||| ||||||| ||||| ||||||    
T  11275771 ctatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgttgagat 11275831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11196305 - 11196575
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| |||||||||||||||||||||||||     
T  11196305 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc 11196404  T
Q  370 accgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctgg 469  Q
    |||||||||||  ||||||||||||| |||||   | |||| |               | ||||||||| |||  | ||||||||||||||||||||| |    
T  11196405 accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11196489  T
Q  470 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    |||||||||||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11196490 tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11196575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 555
Target Start/End: Complemental strand, 11315147 - 11315049
Alignment:
Q  457 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| |||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac 11315049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 555
Target Start/End: Original strand, 11155997 - 11156122
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 529  Q
    ||||||||| |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11155997 aagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11156096  T
Q  530 tacacttttctacactctccatgcac 555  Q
    |||||||||| ||| |||||||||||    
T  11156097 tacacttttccacaatctccatgcac 11156122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 555
Target Start/End: Original strand, 11160864 - 11160989
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 529  Q
    ||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11160864 aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11160963  T
Q  530 tacacttttctacactctccatgcac 555  Q
    |||||||||||||| |||||||||||    
T  11160964 tacacttttctacaatctccatgcac 11160989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 555
Target Start/End: Original strand, 11199440 - 11199565
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 529  Q
    ||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11199440 aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11199539  T
Q  530 tacacttttctacactctccatgcac 555  Q
    |||||||||||||| |||||||||||    
T  11199540 tacacttttctacaatctccatgcac 11199565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 430 - 555
Target Start/End: Complemental strand, 11241864 - 11241739
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 529  Q
    ||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11241864 aagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11241765  T
Q  530 tacacttttctacactctccatgcac 555  Q
    |||||||||| ||| |||||||||||    
T  11241764 tacacttttccacaatctccatgcac 11241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 11132719 - 11132791
Alignment:
Q  428 caaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 500  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132719 caaagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 11160719 - 11160850
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| |  | |||||||   |||| |||||||||||||||||||||||||     
T  11160719 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc 11160818  T
Q  370 accgcctcatctgcattgatgcttttacataa 401  Q
    || ||||||||  ||||||||||||| |||||    
T  11160819 actgcctcatcgacattgatgcttttgcataa 11160850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 401  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11155983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 401  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11199426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
Q  82 ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat 154  Q
    ||||||||||| ||| ||||   ||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  11196117 ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat 11196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  349 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 401  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||| | |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| ||||||||||| |||||||||||||     
T  11242009 tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc 11241910  T
Q  370 accgcctcatctgcattgatgcttttacataa 401  Q
    || ||||||||  ||||||||||||| |||||    
T  11241909 acagcctcatcgacattgatgcttttgcataa 11241878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
Q  287 tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact 335  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  11319866 tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact 11319818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
Q  109 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 158  Q
    ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  11155697 agcaagttgttttccctagttattttcctctcaccttcataaacatgaat 11155746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
Q  346 gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactcc 405  Q
    |||||||||||||| ||| ||||||  || ||||||||||| |||||||| |||||||||    
T  11132652 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
Q  105 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata 165  Q
    |||||||||||||||  || |||||||||  || |||||||| |||||||||||| |||||    
T  11132411 tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata 11132471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 361 - 580
Target Start/End: Original strand, 546 - 765
Alignment:
Q  361 ccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcactttta 460  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||  ||  | |||| |||||||||||| ||||||   ||| |||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta 645  T
Q  461 caatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtc 560  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||| ||   ||||||||||||| ||||||| ||||||||||||||||||||| |||     
T  646 caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggtt 745  T
Q  561 aaaaagattcttgctgagat 580  Q
    ||||||| ||||| ||||||    
T  746 aaaaagactcttgttgagat 765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University