View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4026_high_3 (Length: 467)
Name: NF4026_high_3
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4026_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 46584545 - 46584119
Alignment:
| Q |
18 |
tgcttttggaaagatcttccgaatattgtaacttctttg-annnnnnngtaagaaacttattaatagtggatcatagagtttatcgcactcttagattaa |
116 |
Q |
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| T |
46584545 |
tgcttttggaaagatcttccgaatattgtaacttctttgtatttttttgtaagaaacttattaatagtggattatagagtttatcgcactcttagattaa |
46584446 |
T |
|
| Q |
117 |
ttatttggaccgtttgattgttgattgttattgttatatgctccgcatctttgtcttgttggttttgcataagggtttgaatttacaacaaactcaacaa |
216 |
Q |
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| T |
46584445 |
ttgtttggaccgtttggttgtcgattgttattgttatatgctccgcatctttgtcttgttggttttgcacaagggtttgaattcacaacaaactgaacaa |
46584346 |
T |
|
| Q |
217 |
atctttcttttaacaaaaatggatccaattagtaaa-aattgacttatatacaaatgagttgatttaactcacgttgttggtgtaaagattttgttggtg |
315 |
Q |
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|| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46584345 |
atatttcttttaacaaaaatggatctaattagtaaagaattgacttatatacaaatgagttgatttaactcacgttgttggtgtaaagattttgttggtg |
46584246 |
T |
|
| Q |
316 |
gttaatatttaaatacatatatatcggtgctctttgatgcttaaagattattttacgaactttgatatcaaactcatgtagacttttaacataaacatct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
46584245 |
gttaatatttaaatacatatatatcggtgctctttgatgtttaaagattattttatgagctttgatat----------tagacttttaacataaacatct |
46584156 |
T |
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| Q |
416 |
tttataaatgaactgaggtagagactaaaatattaaa |
452 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46584155 |
tttataaatgaactgaggtagagactaaaatattaaa |
46584119 |
T |
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