View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4026_high_6 (Length: 389)

Name: NF4026_high_6
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4026_high_6
NF4026_high_6
[»] chr2 (2 HSPs)
chr2 (1-389)||(7368858-7369247)
chr2 (40-190)||(7290050-7290200)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 7368858 - 7369247
Alignment:
Q  1 cctataaattgagcataaaaaatcaaagagaggaacgaggaggagcttgctcttgctttgtggatgttggtggggtggtacaatgggtgctgcaactgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7368858 cctataaattgagcacaaaaaatcaaagagaggaacgaggaggagcttgctcttgctttgtagatgttggtggggtggtacaatgggtgctgcaactgag 7368957  T
Q  101 ctcataattgacactgaaatatgtaaacacttcaccatgcacttttaccttttaggatgatatatacattagttaaattcatgtataa---caagctgct 197  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  7368958 ctcataattgacactgaaat--gtaaacacttcaccatgcacttttaccttttaggatgatatatacattagttaaattcatgtataataacaagctgct 7369055  T
Q  198 tagcgtttgaattataacannnnnnnaacgtagtacatatgagaaattagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaa 297  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7369056 tagcgtttgaattataacatttttttaacgtagtacatatgagaaattagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaa 7369155  T
Q  298 agaaattatccattgaccactgtcttcgtccctaatgcaagcaccaattgctgtaaatccaggatcagcgaaaaatatagtgtcaatgtagc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  7369156 agaaattatccattgaccactgtcttcgtccctaatgcaagcaccaattgctgtaaatccaagatcagcgaaaaatatagcgtcaatgtagc 7369247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 7290050 - 7290200
Alignment:
Q  40 gaggagcttgctcttgctttgt-ggatgttggtggggt-ggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcacca 137  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||    
T  7290050 gaggagcttgctcttgctttgttgggtgttggtggggttggtacaatgggtgctgcagctgagctcataattgacactgaa--atgtaaacacttcaaca 7290147  T
Q  138 tgcacttttaccttttaggatgatatatacattagttaaa-ttcatgtataaca 190  Q
    |||| |||||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  7290148 tgcagttttacatttt-ggatgatatgtacattagttaaatttcatgtataaca 7290200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University