View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4026_low_10 (Length: 291)
Name: NF4026_low_10
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4026_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 34636979 - 34636718
Alignment:
| Q |
15 |
cataggcccaatgagttttgtgctttgtttatagttcctccatgcaaagcctccagggacaagccagtaattaattagagaaatagtgaggagggtggag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636979 |
cataggcccaatgagttttgtgctttgtttatagttcctccatgcaaagcctccagggacaagccagtaattaattagagaaatagtgaggagggtggag |
34636880 |
T |
|
| Q |
115 |
ataaagagagtattaattattagaggccaatagaaggtggttagaaatattgatctaagaacatgatagacaagtgttgtgattaggagccaaaggaatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636879 |
ataaagagagtattaattattagaggccaatagaaggtggttagaaatattgatcttagaacatgatagacaagtgttgtgattaggagccaaaggaatg |
34636780 |
T |
|
| Q |
215 |
ttagtgtgggtttcatgtttagggaagtttttggaagaggaagtggaattgatggttaaagg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34636779 |
ttagtgtgggtttcatgtttagggaagtttttggaagaagaagtggaattgatggttaaagg |
34636718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University