View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4026_low_13 (Length: 257)
Name: NF4026_low_13
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4026_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 14427177 - 14427285
Alignment:
| Q |
4 |
tcgaccctataatgaaaaataacatcataagaagaaaattgaactaacacatttagttatgtaaattaactatcaaagtacccataatgacattttcaca |
103 |
Q |
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| T |
14427177 |
tcgaccctgtaatgaaaaataacatcataagaagaaaattgaactaacacatttagttatgtaaattaactatcaaagtacccacaatgacattttcaca |
14427276 |
T |
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| Q |
104 |
cgtacacaa |
112 |
Q |
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| T |
14427277 |
cgtacacaa |
14427285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 14417120 - 14417224
Alignment:
| Q |
6 |
gaccctataatgaaaaataacatcataagaagaaaattgaactaa--cacatttagttatgtaaattaactatcaaagtacccataatgacattttcaca |
103 |
Q |
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| T |
14417120 |
gaccctgtgatgaaaaataacatcatagaaagaaaaatgaacaaaaacacatttagttatgtaaaacaactatcatagta-tcataatgacattttcaca |
14417218 |
T |
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| Q |
104 |
cgtaca |
109 |
Q |
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||||| |
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| T |
14417219 |
tgtaca |
14417224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 14417297 - 14417349
Alignment:
| Q |
181 |
ttttactttcaaataaccatagaaagtgacattttttaaaatagatataacac |
233 |
Q |
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| T |
14417297 |
ttttactttcaaataactataggaagtgacattatttaatataaacataacac |
14417349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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