View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4026_low_4 (Length: 413)
Name: NF4026_low_4
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4026_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 42901627 - 42901247
Alignment:
| Q |
8 |
agacaaactattgtcagaaaagaatattaagccagagcccaaattattatttataatttaaaagaaagtaacactccattccaaatatgggaaaaattat |
107 |
Q |
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| T |
42901627 |
agacaaactattgtcagaaaagaatattaagccaaagcccaaattattatttataatttaaaagaaagtaacactccattccaaatatgggaaaaattat |
42901528 |
T |
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| Q |
108 |
tgtatatattttataagaaaattaagaattactacaaagttgaaagctgaataaggtatatgcactactctggtattgtcatagattcctgtttcattgt |
207 |
Q |
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| T |
42901527 |
tgtatat--tttataagaaaattaagaattactacaaagttgaaagctgaataaggtatatgcactactctggtattgtcatagattcctgtttcattgt |
42901430 |
T |
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| Q |
208 |
tacccataccagagaattaacagtttttctatataaaattgtttgacaggtgtcaatgccaataacaaaatgataaaaaagaatatgttttgaaaagatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42901429 |
tacccataccagagaattaacagtttttctatataaaattgtttgacaggtgtcaatgccaataacaaaatgataaaaaataatatgttttgaaaagatt |
42901330 |
T |
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| Q |
308 |
taatttgatttgttnnnnnnnnnngttgtatacaccaacattttataacctttttgctttctatcaaatcattgaatgtattag |
391 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
42901329 |
taatttgatttgttaaaaaaaaaa-ttgtatataccaacattttataacctttttacgttctatcaaatcattgaatgtattag |
42901247 |
T |
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