View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4026_low_5 (Length: 390)

Name: NF4026_low_5
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4026_low_5
NF4026_low_5
[»] chr3 (6 HSPs)
chr3 (6-390)||(11968077-11968447)
chr3 (1-169)||(16975136-16975312)
chr3 (17-103)||(7337291-7337377)
chr3 (1-62)||(5004912-5004973)
chr3 (1-59)||(46404754-46404813)
chr3 (1-60)||(16475277-16475336)
[»] chr7 (11 HSPs)
chr7 (24-273)||(49170491-49170741)
chr7 (8-273)||(12196765-12197026)
chr7 (1-103)||(48654420-48654522)
chr7 (17-103)||(10289388-10289474)
chr7 (1-60)||(48576331-48576390)
chr7 (1-58)||(15874129-15874186)
chr7 (1-59)||(22077633-22077691)
chr7 (1-50)||(21491690-21491739)
chr7 (22-60)||(7503908-7503946)
chr7 (2-59)||(18367519-18367576)
chr7 (18-77)||(12911912-12911970)
[»] chr1 (10 HSPs)
chr1 (18-273)||(8421359-8421615)
chr1 (1-59)||(35762244-35762302)
chr1 (18-103)||(21264799-21264884)
chr1 (17-78)||(43407964-43408025)
chr1 (1-57)||(9537546-9537602)
chr1 (1-52)||(37667342-37667393)
chr1 (19-59)||(338060-338100)
chr1 (50-88)||(2269840-2269878)
chr1 (16-61)||(16074708-16074753)
chr1 (18-58)||(6835953-6835993)
[»] chr2 (9 HSPs)
chr2 (49-388)||(22403415-22403757)
chr2 (1-103)||(32735484-32735586)
chr2 (24-148)||(41340858-41340981)
chr2 (91-169)||(36732564-36732642)
chr2 (1-60)||(12774998-12775057)
chr2 (18-78)||(18292927-18292986)
chr2 (1-60)||(28267736-28267794)
chr2 (224-320)||(41341000-41341098)
chr2 (19-59)||(40447433-40447473)
[»] scaffold0413 (2 HSPs)
scaffold0413 (1-148)||(8749-8898)
scaffold0413 (270-388)||(8562-8680)
[»] chr6 (10 HSPs)
chr6 (7-156)||(10751623-10751772)
chr6 (222-388)||(10751779-10751946)
chr6 (1-103)||(13777291-13777393)
chr6 (1-58)||(34636188-34636245)
chr6 (1-59)||(23260770-23260828)
chr6 (1-58)||(26182643-26182700)
chr6 (1-60)||(25005143-25005202)
chr6 (1-61)||(32450455-32450514)
chr6 (24-61)||(11166627-11166664)
chr6 (2-78)||(24992398-24992473)
[»] chr8 (2 HSPs)
chr8 (38-156)||(35839004-35839122)
chr8 (35-79)||(22816565-22816609)
[»] chr4 (4 HSPs)
chr4 (19-78)||(40458887-40458946)
chr4 (1-60)||(28969373-28969432)
chr4 (1-61)||(41868568-41868627)
chr4 (83-169)||(42900719-42900805)
[»] chr5 (4 HSPs)
chr5 (1-58)||(536731-536788)
chr5 (19-71)||(38000833-38000885)
chr5 (1-59)||(4558165-4558222)
chr5 (8-60)||(27026620-27026672)
[»] scaffold0120 (1 HSPs)
scaffold0120 (8-61)||(2669-2722)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 390
Target Start/End: Original strand, 11968077 - 11968447
Alignment:
Q  6 tcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcac 105  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  11968077 tcataacatcatcctagtacttagtatggacgtatgggaaaaaa-cccttacctcgagaacttttcttcctagccaaactctaaaccacctcaaactcac 11968175  T
Q  106 cgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaagaagatttacatgttggaaacacgttgaccaaaaat 205  Q
     ||||          |  |||||||||||| |||| ||||||||||||||| ||    |||||||| |||||||||||||| |||||| || |||| |||    
T  11968176 agctaa---------atgttgtctcgcactgcagggattattttgacgatccga----tgaaaagaggatttacatgttgggaacacgctgtccaataat 11968262  T
Q  206 tagctcaatctgacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacac-gaaatggcttaaattagaatttcatgaagtgagac 304  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||  ||||| ||||||||||||||| ||||||||||||    
T  11968263 tagctcaatcagacagtgaacgaagccgtagtcgcaattctacgatgacaggtttgaagaaaacaaaaatgacttaaattagaatttgatgaagtgagac 11968362  T
Q  305 aagagataaattagaagaacataaatgaaaaggacttacacgaaaattatttgacaagatgatagcatagggattgatcgatgggg 390  Q
    ||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11968363 aagggataaattagaagaacatatatgaaaaggacttgcacgaaaatta-ttgacaagatgatagcatagggattgatcgatgggg 11968447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 16975312 - 16975136
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatgggga-aaaagcccttaccttgagagcttttcttcctagccgaactctaaac-------c 92  Q
    |||||||||||||||||||||||||||| || | | ||||||||  |||||||||||||| |  ||||||||||||||||| ||| ||||||            
T  16975312 ctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacctcgtaagcttttcttcctagccaaacactaaactacctcaa 16975213  T
Q  93 acctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaa 169  Q
    ||||||||||||| ||||| || |||||||||| |||  ||||||||||||||||||||||||  ||||||||||||    
T  16975212 acctcaaactcacagctacggtacagacacattttctgtcactccaggaattattttgacgattggaccgttgaaaa 16975136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 7337291 - 7337377
Alignment:
Q  17 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 103  Q
    |||||| |||||||||||||||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 7337377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5004912 - 5004973
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttga 62  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5004912 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttga 5004973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46404754 - 46404813
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatgggg-aaaaagcccttacct 59  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  46404754 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacct 46404813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16475336 - 16475277
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||| | ||||||||    
T  16475336 ctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacctt 16475277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 49170491 - 49170741
Alignment:
Q  24 acttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacaca 123  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||||     
T  49170491 acttagtatggacgtatggggaaaaaacccttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacg 49170590  T
Q  124 ttgtctcgcactccaggaattattttgacgatcagaccgttgaaa-agaagatttacatgttggaaacacgttgaccaaaaattagctcaatctgacagt 222  Q
    || |||| ||||||||||  || |||||||||| |||||||||||  |||||    |||||||| |||||| |  |||||||||||||||||| ||| ||    
T  49170591 ttttctctcactccaggagatagtttgacgatcggaccgttgaaattgaagaaccgcatgttgggaacacgctttccaaaaattagctcaatcggacggt 49170690  T
Q  223 gaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa 273  Q
    ||||||||||||||||||||||||| ||||||| |||| | ||| ||||||    
T  49170691 gaacgaagccgtagtcgcaattctacgatgacatgtttgaggaaaacgaaa 49170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 12196765 - 12197026
Alignment:
Q  8 ataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccg 107  Q
    |||||||| |||| | |||||||| | | |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| |    
T  12196765 ataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttaccttgtaagtttttcttcctagccgaactctaaaccacctcaaactcacag 12196864  T
Q  108 ctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaagaagatttacatgttggaaacacgttgaccaaaaatta 207  Q
    |||| |||||||||| || |||| |||||||||||||||||||||||||| ||    |||| ||| |   ||||| ||  |||| |||  ||||| ||||    
T  12196865 ctacggtgcagacacgttttctctcactccaggaattattttgacgatcaaac----gaaacgaaaaaccacatgctgagaacatgttttccaaatatta 12196960  T
Q  208 gctcaatctgacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa 273  Q
    |||| ||| ||| |||||||||| |||||| ||||||||| |||||||||||| | ||| ||||||    
T  12196961 gctccatcggaccgtgaacgaaggcgtagttgcaattctacgatgacaggttttaggaaaacgaaa 12197026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48654420 - 48654522
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaa 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  48654420 ctaattcacaacatcatcctagtacttagtatggacgtatggggaaaaaacccttacctcgaaagcttttgttcctagccgaactctaaaccacctcaaa 48654519  T
Q  101 ctc 103  Q
    |||    
T  48654520 ctc 48654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 10289388 - 10289474
Alignment:
Q  17 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 103  Q
    |||||| |||||||||||||||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 10289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48576390 - 48576331
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  48576390 ctaattcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacctt 48576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15874129 - 15874186
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 58  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  15874129 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22077691 - 22077633
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||||||||||||| |||||||||||||||||| || |||||| |||||||||||||||    
T  22077691 ctaattcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacct 22077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21491690 - 21491739
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaag 50  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  21491690 ctaattcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 7503946 - 7503908
Alignment:
Q  22 gtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacctt 7503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 18367519 - 18367576
Alignment:
Q  2 taattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||||||||||||  ||||||| |||| ||||||||||| ||||||||||||||||||    
T  18367519 taattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacct 18367576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 12911912 - 12911970
Alignment:
Q  18 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttccta 77  Q
    ||||| ||||||||||||||||| |||||||| |||||||||  ||||||||||||||||    
T  12911912 cctagcacttagtatggacgtat-gggaaaaaacccttacctcaagagcttttcttccta 12911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 8421615 - 8421359
Alignment:
Q  18 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgca 117  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| |    
T  8421615 cctagcacttagtatgtacgtatggggaaaaagcccttaccttgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaa 8421516  T
Q  118 gacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaa-agaagatttacatgttggaaacacgttgaccaaaaattagctcaatct 216  Q
    ||||   | |||| || ||||||| ||| |||||||| | |||||||||||  |||||    |||||||| |||||| || |||||||| |||||||||     
T  8421515 gacatggtttctctcagtccaggagttagtttgacgaccggaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaatgagctcaatcg 8421416  T
Q  217 gacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa 273  Q
    ||| |||||||||| |||| ||||||||||| ||||||| |||| | ||| ||||||    
T  8421415 gacggtgaacgaaggcgtaatcgcaattctacgatgacatgtttgaggaaaacgaaa 8421359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35762244 - 35762302
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35762244 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 21264799 - 21264884
Alignment:
Q  18 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 103  Q
    ||||| |||||||| | ||||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  21264799 cctagcacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 21264884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 43407964 - 43408025
Alignment:
Q  17 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctag 78  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag 43408025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9537546 - 9537602
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttac 57  Q
    |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||    
T  9537546 ctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37667342 - 37667393
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcc 52  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  37667342 ctaattcataacataatcctattacttagtaagaacgtatggggaaaaagcc 37667393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 338100 - 338060
Alignment:
Q  19 ctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  338100 ctagcacttagtatggacgtatggggaaaaagcccttacct 338060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 2269840 - 2269878
Alignment:
Q  50 gcccttaccttgagagcttttcttcctagccgaactcta 88  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2269840 gcccttaccttgagagctcttcttcctagccgaactcta 2269878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 16074753 - 16074708
Alignment:
Q  16 atcctagtacttagtatggacgtatggggaaaaagcccttaccttg 61  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||    
T  16074753 atcccagtacttagtatgaacgtatgggaaaaaagcccttaccttg 16074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6835993 - 6835953
Alignment:
Q  18 cctagtacttagtatggacgtatggggaaaaagcccttacc 58  Q
    ||||| |||||||| | ||||||||||||||||||||||||    
T  6835993 cctagcacttagtaagaacgtatggggaaaaagcccttacc 6835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 49 - 388
Target Start/End: Complemental strand, 22403757 - 22403415
Alignment:
Q  49 agcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattt 148  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||  | |||| | ||||||  |||| ||    
T  22403757 agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactcacagctacggtgcagacacgatttctctcgctccagtcattaatt 22403658  T
Q  149 tgacgatcagaccgttgaaaa-gaagatttacatgttggaaacacgttgaccaaaaattagctcaatctgacagtgaacgaagccgtagtcgcaattcta 247  Q
    |||||||||| |||||||||| |||||  | ||||||| ||||| | || |||||||||||||||||   || |||||||||| ||||| | |||||||     
T  22403657 tgacgatcaggccgttgaaaatgaagaactgcatgttgcaaacatgctgcccaaaaattagctcaattgaacggtgaacgaaggcgtagacacaattctc 22403558  T
Q  248 t--gatgacaggtttaaagaacacgaaa-tggcttaa-attagaatttcatgaagtgagacaagagataaattagaagaacataaatg-aaaaggactta 342  Q
    |  || ||||||||||  ||| |||||| ||| |||| |||||||||||||  || |||| |||| ||||| | |||||||||| ||  |||||||||||    
T  22403557 tacga-gacaggtttagtgaaaacgaaaatggtttaagattagaatttcat--agcgagataagaaataaaatggaagaacatatatacaaaaggactta 22403461  T
Q  343 cacgaaaattatttgacaagatgatagcatagggattgatcgatgg 388  Q
    ||||||||||||||||||||||||  || |||| ||||||||||||    
T  22403460 cacgaaaattatttgacaagatgagggcttaggaattgatcgatgg 22403415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32735484 - 32735586
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaa 100  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32735484 ctaattcataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttcttcctagccgaactctaaaccacctcaaa 32735583  T
Q  101 ctc 103  Q
    |||    
T  32735584 ctc 32735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 41340858 - 41340981
Alignment:
Q  24 acttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacaca 123  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||  |||| ||  ||||||     
T  41340858 acttagtatggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacaactacggttaagacacg 41340956  T
Q  124 ttgtctcgcactccaggaattattt 148  Q
    || |||| ||||||| |||||||||    
T  41340957 ttttctctcactccaagaattattt 41340981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 36732564 - 36732642
Alignment:
Q  91 ccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaa 169  Q
    ||||||||||||||   |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  36732564 ccacctcaaactcataactactgtgcagacacattttctctcactccaggaattattttgacgatcggaccgttgaaaa 36732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12774998 - 12775057
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  12774998 ctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagcccttacctt 12775057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 18292927 - 18292986
Alignment:
Q  18 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctag 78  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  18292927 cctagcacttagtatggacgtatgggaaaaaaacccttaccttgagag-ttttcttcctag 18292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28267736 - 28267794
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  28267736 ctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaacccttacctt 28267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 41341000 - 41341098
Alignment:
Q  224 aacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa-tggcttaaattagaattt-catgaagtgagacaagagataaattagaa 320  Q
    ||||||| |||||||||| ||||| | |||| ||||| | ||| |||||| || ||||||| ||||||| |||||||||| ||||||||||||||||||    
T  41341000 aacgaaggcgtagtcgcagttctacgctgactggtttgaggaaaacgaaaatgacttaaatcagaattttcatgaagtgaaacaagagataaattagaa 41341098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 40447473 - 40447433
Alignment:
Q  19 ctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40447473 ctagcacttagtatggacgtatggggaaaaagcccttacct 40447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8898 - 8749
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaa 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||    
T  8898 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttcttcctagccaaactctaaaccaactcaaa 8799  T
Q  101 ctcac--cgctactgtgcagacacattgtctcgcactccaggaattattt 148  Q
     ||||  ||||||||||||||||| || || |  ||||||||||||||||    
T  8798 gtcacagcgctactgtgcagacacgttttcactaactccaggaattattt 8749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 388
Target Start/End: Complemental strand, 8680 - 8562
Alignment:
Q  270 gaaatggctta-aattagaatttcatgaagtgagacaagagataaattagaagaacataaatg-aaaaggacttacacgaaaattatttgacaagatgat 367  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8680 gaaatggcttagaattagaatttcat--agtgagacaagaaataaaatggaagaacatatatgcaaaaggacttacacgaaaattatttgacaagatgat 8583  T
Q  368 agcatagggattgatcgatgg 388  Q
    ||||||| ||||| |||||||    
T  8582 agcatagagattggtcgatgg 8562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 10751623 - 10751772
Alignment:
Q  7 cataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcacc 106  Q
    |||||||| ||| |||||||||||| | | |||||||||||| |||||||||| |  ||||||  ||||||||| ||| |||||| |||||||||||||     
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacctcgtaagctttcattcctagccaaacactaaactacctcaaactcaca 10751722  T
Q  107 gctactgtgcagacacattgtctcgcactccaggaattattttgacgatc 156  Q
    |||||||| || |||| || |||  |||||||||||||||||||||||||    
T  10751723 gctactgttcaaacacgttttctgtcactccaggaattattttgacgatc 10751772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 388
Target Start/End: Original strand, 10751779 - 10751946
Alignment:
Q  222 tgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacg-aaatggctta-aattagaatttcatgaagtgagacaagagataaattaga 319  Q
    ||||||||| |||||||||| ||||   | ||||||||||  ||| ||| |||||||||| ||||||||||||||  |||||||||||| ||||| | ||    
T  10751779 tgaacgaaggcgtagtcgcagttctccaaggacaggtttagtgaaaacggaaatggcttagaattagaatttcat--agtgagacaagaaataaaatgga 10751876  T
Q  320 agaacataaatg-aaaaggacttacacgaaaattatttgacaagatgatagcatagggattgatcgatgg 388  Q
    |||||||| ||| |||||||||| ||| |||||||||| ||||||||||||||||| ||||| |||||||    
T  10751877 agaacatatatgcaaaaggacttgcacaaaaattatttaacaagatgatagcatagagattggtcgatgg 10751946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13777291 - 13777393
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaa 100  Q
    |||||||| ||||| ||||||||| ||| |||||||||| |||||||||| |||||||| |  |||||| |||||||||| |||||||||||||||||||    
T  13777291 ctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaa 13777390  T
Q  101 ctc 103  Q
    |||    
T  13777391 ctc 13777393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34636245 - 34636188
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 58  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  34636245 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23260770 - 23260828
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||    
T  23260770 ctaattcataacataatcctaatacttagtaagaacgtatggggaaaaagcccttacct 23260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26182643 - 26182700
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 58  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  26182643 ctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25005202 - 25005143
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||| | ||||||||    
T  25005202 ctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacctt 25005143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32450455 - 32450514
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 61  Q
    ||||||||||||| ||||||||||||||||| | ||||| |||| ||||||||||||||||    
T  32450455 ctaattcataacacaatcctagtacttagtaagaacgtacgggg-aaaagcccttaccttg 32450514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 11166627 - 11166664
Alignment:
Q  24 acttagtatggacgtatggggaaaaagcccttaccttg 61  Q
    |||||||| | |||||||||||||||||||||||||||    
T  11166627 acttagtaagaacgtatggggaaaaagcccttaccttg 11166664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 24992473 - 24992398
Alignment:
Q  2 taattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc-ttgagagcttttcttcctag 78  Q
    ||||||||||||||  ||||||||||| ||| ||| ||| ||||||||||||||||| ||||  ||||||||||||||    
T  24992473 taattcataacatatccctagtacttaatatagacatat-gggaaaaagcccttaccattga-cgcttttcttcctag 24992398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 35839122 - 35839004
Alignment:
Q  38 tatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactcc 137  Q
    |||||||||||||| |||| || |||||||||||||||||| | ||||||||||||||||||| ||||  |||  |||||||||| || |||| |||||     
T  35839122 tatggggaaaaagctcttagctcgagagcttttcttcctagtcaaactctaaaccacctcaaagtcacaactatggtgcagacacgttttctctcactct 35839023  T
Q  138 aggaattattttgacgatc 156  Q
    ||| |||||||||||||||    
T  35839022 agggattattttgacgatc 35839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 22816565 - 22816609
Alignment:
Q  35 acgtatggggaaaaagcccttaccttgagagcttttcttcctagc 79  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  22816565 acgtatggggaaaaagcccttacctcgagagctttccttcctagc 22816609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 40458946 - 40458887
Alignment:
Q  19 ctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctag 78  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40458946 ctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag 40458887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28969373 - 28969432
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  28969373 ctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacctt 28969432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41868627 - 41868568
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 61  Q
    |||||||| ||||| |||||| |||||||||||||||||| |||||||||| |||||||||    
T  41868627 ctaattcacaacatcatcctaatacttagtatggacgtat-gggaaaaagcacttaccttg 41868568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 42900719 - 42900805
Alignment:
Q  83 actctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaa 169  Q
    ||||||| || |||||||||||| || ||  ||||||| |||| |||| |||||||| |||||||| || |||| ||| ||||||||    
T  42900719 actctaagccgcctcaaactcacagccacaatgcagactcattttctctcactccagaaattatttggatgatcggacagttgaaaa 42900805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 536788 - 536731
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 58  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  536788 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 38000885 - 38000833
Alignment:
Q  19 ctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 71  Q
    |||| |||||||||||||||||||||||||| |||||||||||  ||||||||    
T  38000885 ctagcacttagtatggacgtatggggaaaaaacccttaccttgccagcttttc 38000833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4558165 - 4558222
Alignment:
Q  1 ctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 59  Q
    |||| ||||||||| |||||| |||||||||| |||||||||| |||||||||||||||    
T  4558165 ctaaatcataacatcatcctaatacttagtatagacgtatggg-aaaaagcccttacct 4558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 27026672 - 27026620
Alignment:
Q  8 ataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 60  Q
    |||||| |||||||| ||||||||   ||||||||||||||||||||||||||    
T  27026672 ataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacctt 27026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 2669 - 2722
Alignment:
Q  8 ataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 61  Q
    |||||| | |||||| |||||||| | |||||||||||||||||||||||||||    
T  2669 ataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttaccttg 2722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University