View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4026_low_6 (Length: 389)

Name: NF4026_low_6
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4026_low_6
NF4026_low_6
[»] chr2 (2 HSPs)
chr2 (1-389)||(7368858-7369247)
chr2 (40-190)||(7290050-7290200)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 7368858 - 7369247
Alignment:
Q  1 cctataaattgagcataaaaaatcaaagagaggaacgaggaggagcttgctcttgctttgtggatgttggtggggtggtacaatgggtgctgcaactgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7368858 cctataaattgagcacaaaaaatcaaagagaggaacgaggaggagcttgctcttgctttgtagatgttggtggggtggtacaatgggtgctgcaactgag 7368957  T
Q  101 ctcataattgacactgaaatatgtaaacacttcaccatgcacttttaccttttaggatgatatatacattagttaaattcatgtataa---caagctgct 197  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  7368958 ctcataattgacactgaaat--gtaaacacttcaccatgcacttttaccttttaggatgatatatacattagttaaattcatgtataataacaagctgct 7369055  T
Q  198 tagcgtttgaattataacannnnnnnaacgtagtacatatgagaaattagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaa 297  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7369056 tagcgtttgaattataacatttttttaacgtagtacatatgagaaattagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaa 7369155  T
Q  298 agaaattatccattgaccactgtcttcgtccctaatgcaagcaccaattgctgtaaatccaggatcagcgaaaaatatagtgtcaatgtagc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  7369156 agaaattatccattgaccactgtcttcgtccctaatgcaagcaccaattgctgtaaatccaagatcagcgaaaaatatagcgtcaatgtagc 7369247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 7290050 - 7290200
Alignment:
Q  40 gaggagcttgctcttgctttgt-ggatgttggtggggt-ggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcacca 137  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||    
T  7290050 gaggagcttgctcttgctttgttgggtgttggtggggttggtacaatgggtgctgcagctgagctcataattgacactgaa--atgtaaacacttcaaca 7290147  T
Q  138 tgcacttttaccttttaggatgatatatacattagttaaa-ttcatgtataaca 190  Q
    |||| |||||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  7290148 tgcagttttacatttt-ggatgatatgtacattagttaaatttcatgtataaca 7290200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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